CF834539

Overview
NameCF834539
Unique NameCF834539
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length425
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: RST2_AVESA (Thaumatin-like pathogenesis-related protein 2 OS=Avena sativa GN=RASTL-2 PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 1.953e-11
Identity = 39/96 (40.62%), Postives = 54/96 (56.25%), Query Frame = 1
Query:   52 AGHPILERGGFYLHTLTHRSFPAPAQHWTGRIWAITGCTYAHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPM 339
            AG P+   GGF L++    +   PA    GRIW  TGC++ +G+ SC TGDC   L C   G   PATLA+ T+  G  D   Y +S++D +N+ M
Sbjct:   37 AGIPV--GGGFQLNSKQSSNINVPAGTSAGRIWGRTGCSFNNGRGSCATGDCAGALSCTLSG--QPATLAEYTI-GGSQDF--YDISVIDGYNLAM 125          

HSP 2 Score: 21.9422 bits (45), Expect = 1.953e-11
Identity = 7/12 (58.33%), Postives = 8/12 (66.67%), Query Frame = 3
Query:    3 LVNNCPLHVWPA 38
            + NNC   VWPA
Sbjct:   26 ITNNCGFTVWPA 37          
BLAST of CF834539 vs. ExPASy Swiss-Prot
Match: PRR2_TOBAC (Pathogenesis-related protein R minor form OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.467e-11
Identity = 38/95 (40.00%), Postives = 49/95 (51.58%), Query Frame = 1
Query:  142 RIWAITGCTY-AHGKFSCVTGDCGHRLECNGLGGATPATLAQITLHHGHNDLSSYRVSLVDSFNVPMTVTPHEGKGVCPVVGCRADLLSTCPQNL 423
            RIW  T C +   G+ +C TGDC   LEC G  G  P TLA+  L+  + D     +SLVD FN+PM  +P  G   C  + C A +   CP  L
Sbjct:   68 RIWGRTNCNFDGSGRGNCETGDCNGMLECQGY-GKPPNTLAEFALNQPNQDFVD--ISLVDGFNIPMEFSPTNGG--CRNLRCTAPINEQCPAQL 157          
The following BLAST results are available for this feature:
BLAST of CF834539 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RST2_AVESA1.953e-1140.63Thaumatin-like pathogenesis-related protein 2 OS=A... [more]
PRR2_TOBAC4.467e-1140.00Pathogenesis-related protein R minor form OS=Nicot... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834539 ID=CF834539; Name=CF834539; organism=Citrus sinensis; type=EST; length=425bp
CCCTAGTCAACAACTGCCCCCTTCACGTCTGGCCGGCCATCCAGACCCAA
CGCCGGCCACCCAATCCTCGAACGTGGCGGTTTCTATCTCCATACCCTCA
CCCACCGCTCCTTCCCCGCTCCGGCCCAACACTGGACGGGCCGGATCTGG
GCCATAACCGGCTGCACCTACGCCCACGGCAAATTCTCCTGCGTCACGGG
CGACTGCGGCCACCGCTTGGAATGCAACGGACTCGGCGGGGCGACTCCAG
CCACCCTGGCCCAGATCACCCTCCACCACGGCCACAACGACCTCTCCTCC
TACCGCGTCTCTCTAGTCGACAGCTTCAACGTCCCCATGACTGTCACCCC
GCACGAGGGCAAGGGCGTCTGTCCGGTAGTGGGTTGTCGCGCTGACCTGC
TATCCACGTGTCCTCAGAACCTGCA
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