CF834555

Overview
NameCF834555
Unique NameCF834555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_MOUSE (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Mus musculus GN=Isca1 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.442e-26
Identity = 60/122 (49.18%), Postives = 84/122 (68.85%), Query Frame = 3
Query:   87 ASFLAQAAEKIGPAVRRQAVTLTDSAASRVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            A+  A +  K+ P   R A+TLT SA ++++ LL+ + +   LK+GV+ RGCNGLSY+L Y   +   DE V   GV++ I+ KA + ++GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    8 ATVRAVSKRKLQPT--RAALTLTPSAVNKIKQLLKDKPEHVGLKVGVRTRGCNGLSYSLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTLLGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA1_DANRE (Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Danio rerio GN=isca1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.828e-25
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = 3
Query:  135 RQAVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            R A+TLT SA ++V+ LL  +     LK+GV+ RGCNGL+YTL+Y   + + DE V   GV++ I+ KA + ++GT+MDFV+ KL SEFVF NPN KG CGCGESF
Sbjct:   22 RAALTLTPSAVNKVKQLLDNKPEYIGLKVGVRTRGCNGLTYTLDYTKNKEQSDEEVLQDGVRVFIEKKAQLTLLGTEMDFVETKLSSEFVFNNPNIKGTCGCGESF 127          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_ENT38 (Iron-binding protein iscA OS=Enterobacter sp. (strain 638) GN=iscA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.965e-24
Identity = 53/104 (50.96%), Postives = 74/104 (71.15%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L+ R + Y L+LGV+  GC+G++Y L + DE A  D + EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVSSFLENRGKGYGLRLGVRTSGCSGMAYVLEFVDEPATDDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP3 (Iron-binding protein iscA OS=Klebsiella pneumoniae (strain 342) GN=iscA PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.457e-23
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE A  D + EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNSFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAAEDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_KLEP7 (Iron-binding protein iscA OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=iscA PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.515e-23
Identity = 52/104 (50.00%), Postives = 73/104 (70.19%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE A  D + EDKGVK++ID K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNAFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPAAEDTVFEDKGVKVVIDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SALTY (Iron-binding protein iscA OS=Salmonella typhimurium GN=iscA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SALTI (Iron-binding protein iscA OS=Salmonella typhi GN=iscA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SALSV (Iron-binding protein iscA OS=Salmonella schwarzengrund (strain CVM19633) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SALPK (Iron-binding protein iscA OS=Salmonella paratyphi A (strain AKU_12601) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SALPC (Iron-binding protein iscA OS=Salmonella paratyphi C (strain RKS4594) GN=iscA PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.241e-22
Identity = 50/104 (48.08%), Postives = 72/104 (69.23%), Query Frame = 3
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++TL+DSAA+RV   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  + GT++DFV + L   F F NPN K +CGCGESF
Sbjct:    2 SITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCGESF 105          
The following BLAST results are available for this feature:
BLAST of CF834555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ISCA1_MOUSE7.442e-2649.18Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA1_DANRE2.828e-2553.77Iron-sulfur cluster assembly 1 homolog, mitochondr... [more]
ISCA_ENT386.965e-2450.96Iron-binding protein iscA OS=Enterobacter sp. (str... [more]
ISCA_KLEP33.457e-2350.00Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ISCA_KLEP74.515e-2350.00Iron-binding protein iscA OS=Klebsiella pneumoniae... [more]
ISCA_SALTY2.241e-2248.08Iron-binding protein iscA OS=Salmonella typhimuriu... [more]
ISCA_SALTI2.241e-2248.08Iron-binding protein iscA OS=Salmonella typhi GN=i... [more]
ISCA_SALSV2.241e-2248.08Iron-binding protein iscA OS=Salmonella schwarzeng... [more]
ISCA_SALPK2.241e-2248.08Iron-binding protein iscA OS=Salmonella paratyphi ... [more]
ISCA_SALPC2.241e-2248.08Iron-binding protein iscA OS=Salmonella paratyphi ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834555 ID=CF834555; Name=CF834555; organism=Citrus sinensis; type=EST; length=723bp
TTTTCCCCTTCCTTTAATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATA
GACTTAGATTGCGTGACATTTTGGATATGATCGATGGCTTCGTTTCTGGC
GCAAGCCGCTGAGAAAATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGT
TAACAGACTCCGCCGCATCTAGAGTACGTCACCTCCTCCAGCAACGCCAG
CGACCTTACCTCAAGCTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTC
CTACACCCTCAATTACGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTG
AGGATAAGGGTGTGAAGATACTGATTGATCCAAAAGCTCTCATGCACGTT
ATTGGGACCAAAATGGATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGT
ATTCATTAATCCAAACTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTA
TGACAACCAGCAGTAGTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTC
TTACAAACTAATAGTACATGAAGAATGAACGTAGATGATTCTTTTCCCTG
GCTGGCCAAGCATTACGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGAC
ATCCTCGGTGAGCTTTAATGGCAGTTGGAGCAACAGGGGCTTTACTAATT
CACGTCCTGGGAATCATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAA
ACTATTGTAGCATTTTTTTTCCT
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