CF834555

Overview
NameCF834555
Unique NameCF834555
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPY (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPS (Iron-binding protein iscA OS=Yersinia pseudotuberculosis GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPP (Iron-binding protein iscA OS=Yersinia pestis (strain Pestoides F) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPN (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPG (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Angola) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPE (Iron-binding protein iscA OS=Yersinia pestis GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPB (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERPA (Iron-binding protein iscA OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_YERP3 (Iron-binding protein iscA OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 47/104 (45.19%), Postives = 71/104 (68.27%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            +++++DSAA RV   L  R +   L+LGV+  GC+G++Y L + DE    D + EDKGVK++ID K+++++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SISISDSAAQRVSAFLNHRGKGLGLRLGVRTSGCSGMAYVLEFVDEINDDDIVFEDKGVKVIIDGKSMVYLDGTELDFVKEGLNEGFKFNNPNVSNECGCGESF 105
[Close]
BLAST of CF834555 vs. ExPASy Swiss-Prot
Match: ISCA_SERP5 (Iron-binding protein iscA OS=Serratia proteamaculans (strain 568) GN=iscA PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.097e-20
Identity = 46/104 (44.23%), Postives = 72/104 (69.23%), Query Frame = 3 
Query:  141 AVTLTDSAASRVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 449
            ++T++DSAA RV+  +  R +   L+LGV+  GC+G++Y L + D+    D + E+KGVK++ID K+L+++ GT++DFV + L   F F NPN   +CGCGESF
Sbjct:    2 SITMSDSAAQRVQAFMNNRGKGLGLRLGVRTSGCSGMAYVLEFVDDMNDDDIVFENKGVKVIIDGKSLVYLDGTELDFVKEGLNEGFKFNNPNVSSECGCGESF 105
The following BLAST results are available for this feature:
BLAST of CF834555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 330
Match NameE-valueIdentityDescription
ISCA_YERPY2.097e-2045.19Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPS2.097e-2045.19Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPP2.097e-2045.19Iron-binding protein iscA OS=Yersinia pestis (stra... [more]
ISCA_YERPN2.097e-2045.19Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPG2.097e-2045.19Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERPE2.097e-2045.19Iron-binding protein iscA OS=Yersinia pestis GN=is... [more]
ISCA_YERPB2.097e-2045.19Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_YERPA2.097e-2045.19Iron-binding protein iscA OS=Yersinia pestis bv. A... [more]
ISCA_YERP32.097e-2045.19Iron-binding protein iscA OS=Yersinia pseudotuberc... [more]
ISCA_SERP52.097e-2044.23Iron-binding protein iscA OS=Serratia proteamacula... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834555 ID=CF834555; Name=CF834555; organism=Citrus sinensis; type=EST; length=723bp
TTTTCCCCTTCCTTTAATTTTCTTTTTTTGAAAAAAAAGGAAATTAAATA
GACTTAGATTGCGTGACATTTTGGATATGATCGATGGCTTCGTTTCTGGC
GCAAGCCGCTGAGAAAATCGGACCGGCCGTTAGGCGGCAGGCCGTGACGT
TAACAGACTCCGCCGCATCTAGAGTACGTCACCTCCTCCAGCAACGCCAG
CGACCTTACCTCAAGCTCGGCGTCAAGGCCCGTGGCTGCAACGGCTTGTC
CTACACCCTCAATTACGCCGATGAGAGAGCTAAGTTTGATGAGTTGGTTG
AGGATAAGGGTGTGAAGATACTGATTGATCCAAAAGCTCTCATGCACGTT
ATTGGGACCAAAATGGATTTTGTAGATGATAAGCTCAGGTCTGAGTTTGT
ATTCATTAATCCAAACTCTAAAGGGCAGTGTGGTTGTGGTGAATCCTTTA
TGACAACCAGCAGTAGTGGAGCGTCTAAGCAGGGTGGAAGCTAGGGATTC
TTACAAACTAATAGTACATGAAGAATGAACGTAGATGATTCTTTTCCCTG
GCTGGCCAAGCATTACGCACTTGTCTGAAGGTTGTGAATGAAAGGTAGAC
ATCCTCGGTGAGCTTTAATGGCAGTTGGAGCAACAGGGGCTTTACTAATT
CACGTCCTGGGAATCATTGCTGTTTTGCCGTCTACAAACAAATTTGTAAA
ACTATTGTAGCATTTTTTTTCCT
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