CF834571

Overview
NameCF834571
Unique NameCF834571
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length426
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 60/147 (40.82%), Postives = 83/147 (56.46%), Query Frame = 2
Query:    5 FPETKKTNNDITSIASNGGGVQC--MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            FP   K N      ASN    +C  M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       S  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 165          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEF-KLEKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL+DE +  +++Y++ +GWIPCLEF + +K +V  E        S  Y D RYWTMWKLPM+GC D  QVL E+    K +P ++ R++ FDN++QVQ + F+
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25
Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEF-KLEKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL DE +  +++Y++ +GWIPCLEF + +K +V  E        S  Y D RYWTMWKLPM+GC D  QVL E+    K +P ++ R++ FDN++QVQ + F+
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.440e-25
Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 2
Query:  206 KLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424
            +LE G+VYREH  +P Y DGRYWTMWKLP++GCTD+ QVL EV E +KEYP++F RIIGFDN RQVQ ISFIA
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIA 73          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24
Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 2
Query:   77 KGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFK------LEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            K W P   K+ +T S LPPL ++ + ++++Y+I +GW PCLEF       +      R    S  Y D RYWTMWKLPM+GCTD +QVL EV   Q  +P+ + R++ FDN +QVQ + F+
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFL 150          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24
Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 2
Query:   38 TSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            T+IA+   G   M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       +  Y D RYWTMWKLPM+GCTDA+QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   34 TTIATKNRG---MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       +  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 166          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       +  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       +  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 155          
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23
Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2
Query:   74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421
            M  W P   K  +T S LPPL DE + K+++Y++ + W PCLEF   ++ +   E+       +  Y D RYWTMWKLPM+GCTD +QVL+E+    K +P ++ R++ FD  RQVQ   F+
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164          
The following BLAST results are available for this feature:
BLAST of CF834571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 126
Match NameE-valueIdentityDescription
RBS3_ACECL1.868e-2540.82Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS2_CHLRE1.868e-2544.26Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_CHLRE1.868e-2544.26Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS_SINAL2.440e-2571.23Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS_CHLMO1.211e-2442.98Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS3_ACEAT3.523e-2441.79Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS5_ACECL2.284e-2341.80Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL2.284e-2341.80Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS2_ACEAT2.284e-2341.80Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT2.284e-2341.80Ribulose bisphosphate carboxylase small chain 1, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834571 ID=CF834571; Name=CF834571; organism=Citrus sinensis; type=EST; length=426bp
TGCTTTCCCAGAAACCAAGAAGACCAACAATGACATTACTTCCATTGCGA
GCAACGGCGGAGGAGTCCAATGCATGAAGGGGTGGCCACCAACTGGCTTG
AAGAAGATCAAGACTCTCTCATGCCTCCCGCCACTGGCCGATGAAGCTTT
GCTCAAGGAAATCAATTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGG
AATTCAAGTTGGAGAAAGGATGGGTGTACCGTGAGCACCACAAGTCACCA
TGATACGACGATGGACGCTACTGGACAATGTGGAAGCTGCCCATGTATGG
GTGCACAGATGCAACCCAGGTGTTGAATGAGGTTGGGGAGGTCCAAAAGG
AATACCCACATTCATTCGACCGAATTATCGGATTTGACAACAAGCGTCAA
GTGCAGGGCATCAGTTTCATTGCTGC
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