CF834571
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25 Identity = 60/147 (40.82%), Postives = 83/147 (56.46%), Query Frame = 2 Query: 5 FPETKKTNNDITSIASNGGGVQC--MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 FP K N ASN +C M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ S Y D RYWTMWKLPM+GCTD +QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 165
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25 Identity = 54/122 (44.26%), Postives = 77/122 (63.11%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEF-KLEKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL+DE + +++Y++ +GWIPCLEF + +K +V E S Y D RYWTMWKLPM+GC D QVL E+ K +P ++ R++ FDN++QVQ + F+ Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 114.39 bits (285), Expect = 1.868e-25 Identity = 54/122 (44.26%), Postives = 76/122 (62.30%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEF-KLEKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL DE + +++Y++ +GWIPCLEF + +K +V E S Y D RYWTMWKLPM+GC D QVL E+ K +P ++ R++ FDN++QVQ + F+ Sbjct: 46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFL 167
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 114.005 bits (284), Expect = 2.440e-25 Identity = 52/73 (71.23%), Postives = 61/73 (83.56%), Query Frame = 2 Query: 206 KLEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFIA 424 +LE G+VYREH +P Y DGRYWTMWKLP++GCTD+ QVL EV E +KEYP++F RIIGFDN RQVQ ISFIA Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIA 73
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 1.211e-24 Identity = 52/121 (42.98%), Postives = 74/121 (61.16%), Query Frame = 2 Query: 77 KGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFK------LEKGWVYREHHKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 K W P K+ +T S LPPL ++ + ++++Y+I +GW PCLEF + R S Y D RYWTMWKLPM+GCTD +QVL EV Q +P+ + R++ FDN +QVQ + F+ Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFL 150
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 110.153 bits (274), Expect = 3.523e-24 Identity = 56/134 (41.79%), Postives = 81/134 (60.45%), Query Frame = 2 Query: 38 TSIASNGGGVQCMKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 T+IA+ G M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ + Y D RYWTMWKLPM+GCTDA+QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 34 TTIATKNRG---MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23 Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ + Y D RYWTMWKLPM+GCTD +QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 166
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23 Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ + Y D RYWTMWKLPM+GCTD +QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23 Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ + Y D RYWTMWKLPM+GCTD +QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 155
BLAST of CF834571 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 2.284e-23 Identity = 51/122 (41.80%), Postives = 74/122 (60.66%), Query Frame = 2 Query: 74 MKGWPPTGLKKIKTLSCLPPLADEALLKEINYLIRSGWIPCLEFKL-EKGWVYREH-----HKSP*YDDGRYWTMWKLPMYGCTDATQVLNEVGEVQKEYPHSFDRIIGFDNKRQVQGISFI 421 M W P K +T S LPPL DE + K+++Y++ + W PCLEF ++ + E+ + Y D RYWTMWKLPM+GCTD +QVL+E+ K +P ++ R++ FD RQVQ F+ Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFL 164 The following BLAST results are available for this feature:
BLAST of CF834571 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 126
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834571 ID=CF834571; Name=CF834571; organism=Citrus sinensis; type=EST; length=426bpback to top |