CF834589

Overview
NameCF834589
Unique NameCF834589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: YON8_SCHPO (Transmembrane 9 superfamily protein C1105.08 OS=Schizosaccharomyces pombe GN=SPBC1105.08 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 2.165e-35
Identity = 70/178 (39.33%), Postives = 100/178 (56.18%), Query Frame = -1
Query:  274 YVGSLVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            +VGSL+GF+      PV+TN+IPRQIP  + +++   S +IGG +PF  + IELF IL S+W +                  TC  ++I+  YFQLCSE+Y WWWRS++T G                K+  + L + +LYFGY L+ S   F L G++GF+  F F   IY+S+KID
Sbjct:  452 FVGSLIGFRSREFVPPVRTNQIPRQIPSHSIWLSSFPSAIIGGSIPFLVILIELFSILDSLWFHPLYFMFGFSFFCFGILVTTCIMVSIITVYFQLCSENYNWWWRSFITPGFCGIYVFIFSVFYWFFKISSSSLATAVLYFGYSLLISVLVFFLCGSVGFFGAFLFVNKIYASIKID 629          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S1_PONAB (Transmembrane 9 superfamily member 1 OS=Pongo abelii GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = -1
Query:  274 VGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            +G + G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  429 IGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S1_MOUSE (Transmembrane 9 superfamily member 1 OS=Mus musculus GN=Tm9sf1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = -1
Query:  274 VGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            +G + G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  429 IGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S1_HUMAN (Transmembrane 9 superfamily member 1 OS=Homo sapiens GN=TM9SF1 PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 4.834e-27
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = -1
Query:  274 VGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            +G + G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  429 IGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTVIHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S1_BOVIN (Transmembrane 9 superfamily member 1 OS=Bos taurus GN=TM9SF1 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 8.245e-27
Identity = 59/178 (33.15%), Postives = 92/178 (51.69%), Query Frame = -1
Query:  274 VGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            +G + G    +  D P +T  I R+IP Q WY + +  + +GG LPF A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  429 IGGIFGKNNASPFDAPCRTKNIAREIPPQPWYKSTLVHMTVGGFLPFSAISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGTVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 606          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TMN2_YEAST (Transmembrane 9 superfamily member 2 OS=Saccharomyces cerevisiae GN=TMN2 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 62/179 (34.64%), Postives = 101/179 (56.42%), Query Frame = -1
Query:  274 YVGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            + GS+V  K+   ++ P KTN+I RQIP Q WY+    + LI GI  FG++ +EL+FI +S+W N+                +T + +TI++ Y+ LC E++ W WRS++  G               TK ++  +++ +LY GY LI S    V+TG IGF++  +F R IYS++K++
Sbjct:  495 FAGSIVAHKQCNWDEHPTKTNQIARQIPYQPWYLRTAQATLIAGIFSFGSIAVELYFIYSSLWFNKIFYMFGFLLFSFLLLTLTTSLVTILITYYSLCLENWLWQWRSFIIGGLG-CSIYTFIHSILFTKFKLGGVITVVLYLGYSLIISALCCVVTGAIGFFSSMFFIRKIYSAIKVE 672          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TMN1_YEAST (Transmembrane 9 superfamily member 1 OS=Saccharomyces cerevisiae GN=EMP70 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 63/179 (35.20%), Postives = 99/179 (55.31%), Query Frame = -1
Query:  274 YVGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 807
            + GSL+  K+   ++ P KTN+I RQIP Q WY+  I + LI GI PFG++ +EL+FI TS+W N+                +T + +TI++ Y  LC E+++W WR ++  G+              TK ++    + +LY GY  + S    ++TG+IGF +   F R IYSS+K+D
Sbjct:  490 FAGSLIARKRCHWDEHPTKTNQIARQIPFQPWYLKTIPATLIAGIFPFGSIAVELYFIYTSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITYHSLCLENWKWQWRGFIIGGAG-CALYVFIHSILFTKFKLGGFTTIVLYVGYSSVISLLCCLVTGSIGFISSMLFVRKIYSSIKVD 667          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: PHG1B_DICDI (Putative phagocytic receptor 1b OS=Dictyostelium discoideum GN=phg1b PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.406e-26
Identity = 61/178 (34.27%), Postives = 86/178 (48.31%), Query Frame = -1
Query:  274 VGSLVGFK-KPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            VG + G +     E P +T   PR++P   WY      ILI G LPF A++IELF+I  S+W +                      IT+ L YFQL  ED++WWW S++  GS+                 +  L+    YF YMLI  + FF+L GT+GFY+   F + IY ++K D
Sbjct:  410 VGGIAGRRLSENFEAPCRTKNFPREVPPIQWYRRLPCQILIAGFLPFSAIYIELFYIFNSVWGHSTYTLYGILCLVFLILINVTVCITVALTYFQLSMEDHKWWWNSFINGGSTVVFIYMYSIYYYYYISHMYGLLQATFYFTYMLIVCFFFFILLGTVGFYSSLIFVKRIYRNLKSD 587          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S3_MOUSE (Transmembrane 9 superfamily member 3 OS=Mus musculus GN=Tm9sf3 PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.837e-26
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  274 PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 762
            P + N +PR IPE+ W+M P   + +GGILPFG++FIE++FI TS W  +                +    +TIV  YF L +EDY+W W S+L++ S+              K ++  L     YFGYM + S A  ++ G IG+     F R IY++VKID
Sbjct:  425 PCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 587          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S3_HUMAN (Transmembrane 9 superfamily member 3 OS=Homo sapiens GN=TM9SF3 PE=1 SV=2)

HSP 1 Score: 119.783 bits (299), Expect = 1.837e-26
Identity = 59/163 (36.20%), Postives = 86/163 (52.76%), Query Frame = -1
Query:  274 PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 762
            P + N +PR IPE+ W+M P   + +GGILPFG++FIE++FI TS W  +                +    +TIV  YF L +EDY+W W S+L++ S+              K ++  L     YFGYM + S A  ++ G IG+     F R IY++VKID
Sbjct:  427 PCRVNAVPRPIPEKKWFMEPAVIVCLGGILPFGSIFIEMYFIFTSFWAYKIYYVYGFMMLVLVILCIVTVCVTIVCTYFLLNAEDYRWQWTSFLSAASTAIYVYMYSFYYYFFKTKMYGLFQTSFYFGYMAVFSTALGIMCGAIGYMGTSAFVRKIYTNVKID 589          
The following BLAST results are available for this feature:
BLAST of CF834589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
YON8_SCHPO2.165e-3539.33Transmembrane 9 superfamily protein C1105.08 OS=Sc... [more]
TM9S1_PONAB4.834e-2733.15Transmembrane 9 superfamily member 1 OS=Pongo abel... [more]
TM9S1_MOUSE4.834e-2733.15Transmembrane 9 superfamily member 1 OS=Mus muscul... [more]
TM9S1_HUMAN4.834e-2733.15Transmembrane 9 superfamily member 1 OS=Homo sapie... [more]
TM9S1_BOVIN8.245e-2733.15Transmembrane 9 superfamily member 1 OS=Bos taurus... [more]
TMN2_YEAST1.406e-2634.64Transmembrane 9 superfamily member 2 OS=Saccharomy... [more]
TMN1_YEAST1.406e-2635.20Transmembrane 9 superfamily member 1 OS=Saccharomy... [more]
PHG1B_DICDI1.406e-2634.27Putative phagocytic receptor 1b OS=Dictyostelium d... [more]
TM9S3_MOUSE1.837e-2636.20Transmembrane 9 superfamily member 3 OS=Mus muscul... [more]
TM9S3_HUMAN1.837e-2636.20Transmembrane 9 superfamily member 3 OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834589 ID=CF834589; Name=CF834589; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTGATAAGAAAGAATATATGATTAAAAGTCACCATT
TCACTGATAGGGACATCCTATAACAGAACGGTGGTGTACGACGAAAAATT
AAGAATAAAATATTGTGTAAAAAACAGGATAATAACCTTGTCTCCATACA
AAAATGAGCATGAAAGTTCACATCTGAAAGGCATAATTATATCATACTCC
TGAACTGAACCTTACCCTGAGATAATCTGTTTCAGACGATCGAAATATGC
CCGTTCTCCAGTTTCATCAATTAATCGATCTTCACCGATGAGTAAATCAG
CCTTGTGAACCAAAAGCATGCATAAAATCCAATGGTGCCCGTTAGTACAA
AAAATGCATATGAAGCAATCAGCATGTAACCAAAGTAGAGTATTCCAGAA
ACCAGCTTGGTTATTTCAAGCTTTGTGAAGAAGTAGAATGTTGCGTAAAG
GAAGAGGTACAGAGCAGAAGAGCCTGATGTAAGATATGACCTCCACCACC
ATTGGTAGTCCTCACTGCACAACTGGAAGTAGCATAGCACAATGGTTATT
TCGGCACAGGTGACAATGAGAATGACGAAGACCAAGAAGAGGAAACCAAA
GATGTAATAGAACTGGTTCAGCCAGATTGATGTGAGGATAAAGAAAAGTT
CAATGAAAACGGCTCCAAATGGAAGTATCCCTCCAATGAGAATTGAGAAG
ATTGGGTTCATATACCAAGCCTGCTCAGGGATTTGCCTTGGGATTTTGTT
TGTCTTCACCGGATCCTCAATTGCTGGCTTCTTGAAACCAACCAAACTGC
CAACATATAC
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