CF834589

Overview
NameCF834589
Unique NameCF834589
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length810
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: PHG1C_DICDI (Putative phagocytic receptor 1c OS=Dictyostelium discoideum GN=phg1c PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.175e-19
Identity = 53/168 (31.55%), Postives = 80/168 (47.62%), Query Frame = -1
Query:  274 PAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 777
            P  E PV+ N IPR IP   WY N    +++GGI+PF  +F +L F L+S  L +                ++  E  +++ Y+QL  E+Y WWWRS L    +             T++E   +  G  YF + L+ S    +   +IGF    WFT+ IYS++  D
Sbjct:  490 PPAEYPVRINPIPRFIPTAKWYQNQYLHMILGGIIPFVIIFTDLSFFLSSWVLGEHYSYSLSFALTFILMIISIVETNMIIEYYQLSLENYNWWWRSLLGPMVTGLYTFIYFIYFGITRIETEGV--GFYYFMFSLVFSILVSLFCSSIGFLGNLWFTKKIYSTLHFD 655          
BLAST of CF834589 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.193e-17
Identity = 52/178 (29.21%), Postives = 81/178 (45.51%), Query Frame = -1
Query:  274 VGSLVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXVTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXTKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID 804
            +G + G    +  D P +T  I R+IP Q                   A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++   F R IY ++K+D
Sbjct:  429 IGGIFGKNNASPFDAPCRTKNIAREIPPQPC-----------------AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFSSLKFIRYIYVNLKMD 589          
The following BLAST results are available for this feature:
BLAST of CF834589 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1C_DICDI2.175e-1931.55Putative phagocytic receptor 1c OS=Dictyostelium d... [more]
TM9S1_RAT1.193e-1729.21Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834589 ID=CF834589; Name=CF834589; organism=Citrus sinensis; type=EST; length=810bp
TTTTTTTTTTTTTTTTGATAAGAAAGAATATATGATTAAAAGTCACCATT
TCACTGATAGGGACATCCTATAACAGAACGGTGGTGTACGACGAAAAATT
AAGAATAAAATATTGTGTAAAAAACAGGATAATAACCTTGTCTCCATACA
AAAATGAGCATGAAAGTTCACATCTGAAAGGCATAATTATATCATACTCC
TGAACTGAACCTTACCCTGAGATAATCTGTTTCAGACGATCGAAATATGC
CCGTTCTCCAGTTTCATCAATTAATCGATCTTCACCGATGAGTAAATCAG
CCTTGTGAACCAAAAGCATGCATAAAATCCAATGGTGCCCGTTAGTACAA
AAAATGCATATGAAGCAATCAGCATGTAACCAAAGTAGAGTATTCCAGAA
ACCAGCTTGGTTATTTCAAGCTTTGTGAAGAAGTAGAATGTTGCGTAAAG
GAAGAGGTACAGAGCAGAAGAGCCTGATGTAAGATATGACCTCCACCACC
ATTGGTAGTCCTCACTGCACAACTGGAAGTAGCATAGCACAATGGTTATT
TCGGCACAGGTGACAATGAGAATGACGAAGACCAAGAAGAGGAAACCAAA
GATGTAATAGAACTGGTTCAGCCAGATTGATGTGAGGATAAAGAAAAGTT
CAATGAAAACGGCTCCAAATGGAAGTATCCCTCCAATGAGAATTGAGAAG
ATTGGGTTCATATACCAAGCCTGCTCAGGGATTTGCCTTGGGATTTTGTT
TGTCTTCACCGGATCCTCAATTGCTGGCTTCTTGAAACCAACCAAACTGC
CAACATATAC
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