CF834590

Overview
NameCF834590
Unique NameCF834590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: PHG1C_DICDI (Putative phagocytic receptor 1c OS=Dictyostelium discoideum GN=phg1c PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.228e-25
Identity = 65/240 (27.08%), Postives = 104/240 (43.33%), Query Frame = 2
Query:    2 LFAAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIEDPVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYACFW 721
            +F  Y+S R Y +  GT     +  T    P  +  + F+    +W  K +     GT+F ++ +W  + VP   + S+     P  E PV+ N IPR IP   WY N    +++GGI+PF  +F +L F L+S  L +                 +  E  +++ Y+QL  E+Y WWWRS L    +              ++E   +  G  YF + L+ S    +   +IGF    W
Sbjct:  406 IFNGYSSMRTYIMLGGTRKLYNSVITTTLIPFTILLLMFIGYFQVWSNKFTYGASIGTVFFILAMWLLVCVPCSLLSSYFVRTWPPAEYPVRINPIPRFIPTAKWYQNQYLHMILGGIIPFVIIFTDLSFFLSSWVLGEHYSYSLSFALTFILMIISIVETNMIIEYYQLSLENYNWWWRSLLGPMVTGLYTFIYFIYFGITRIETEGV--GFYYFMFSLVFSILVSLFCSSIGFLGNLW 643          
BLAST of CF834590 vs. ExPASy Swiss-Prot
Match: TM9S1_RAT (Transmembrane 9 superfamily member 1 OS=Rattus norvegicus GN=Tm9sf1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.552e-23
Identity = 64/236 (27.12%), Postives = 102/236 (43.22%), Query Frame = 2
Query:    8 AAYASARLYKLFKGTEWKRIAFRTAITFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALIVLWFGISVPLVYVGSFVGFKKPAIED-PVKTNKIPRQIPEQAWYMNPIFSILIGGILPFGAVFIELFFILTSIWLNQXXXXXXXXXXXXXXXXXTCAEITIVLCYFQLCSEDYQWWWRSYLTSGSSXXXXXXXXXXXXXXKLEITKLVSGILYFGYMLIASYAFFVLTGTIGFYA 712
            + Y S+  Y+   G  W      T   F       + V+N++ W   S+ A+P  T+  L+ +W  +  PL  +G   G    +  D P +T  I R+IP Q                   A+ +EL++I  ++W  +                   A I+I L YFQL  EDY+WWWRS L+ GS+              +  ++  V  + +FGY L+  Y FF++ GTI F++
Sbjct:  356 SGYVSSHFYRQIGGERWVWNIILTTSLFSVPFFLTWSVVNSVHWANGSTQALPVTTILLLLTVWLLVGFPLTVIGGIFGKNNASPFDAPCRTKNIAREIPPQPC-----------------AISVELYYIFATVWGREQYTLYGILFFVFAILLSVGACISIALTYFQLSGEDYRWWWRSVLSVGSTGLFIFLYSVFYYARRSNMSGAVQTVEFFGYSLLTGYVFFLMLGTISFFS 574          
The following BLAST results are available for this feature:
BLAST of CF834590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
PHG1C_DICDI8.228e-2527.08Putative phagocytic receptor 1c OS=Dictyostelium d... [more]
TM9S1_RAT1.552e-2327.12Transmembrane 9 superfamily member 1 OS=Rattus nor... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M16_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834590 ID=CF834590; Name=CF834590; organism=Citrus sinensis; type=EST; length=721bp
TCTTTTTGCTGCTTATGCCTCTGCTCGCTTGTACAAGTTGTTTAAAGGAA
CTGAGTGGAAGAGAATTGCCTTCAGAACTGCAATCACTTTCCCAGGAATT
GTCTCAGCCATTTTCTTTGTCTTGAATGCTCTTATTTGGGGACAGAAATC
GTCCGGGGCTGTGCCATTTGGGACCATGTTTGCTCTCATCGTCTTGTGGT
TTGGAATCTCAGTACCACTAGTATATGTTGGCAGTTTTGTTGGGTTCAAG
AAGCCAGCAATTGAGGATCCGGTGAAGACAAACAAAATCCCAAGGCAAAT
CCCTGAGCAGGCTTGGTATATGAACCCAATCTTCTCAATTCTCATTGGAG
GGATACTTCCATTTGGAGCCGTTTTCATTGAACTTTTCTTTATCCTCACA
TCAATCTGGCTGAACCAGTTCTATTACATCTTTGGTTTCCTCTTCTTGGT
CTTCGTCATTCTCATTGTCACCTGTGCCGAAATAACCATTGTGCTATGCT
ACTTCCAGTTGTGCAGTGAGGACTACCAATGGTGGTGGAGGTCATATCTT
ACATCAGGCTCTTCTGCTCTGTACCTCTTCCTTTACGCAACATTCTACTT
CTTCACAAAGCTTGAAATAACCAAGCTGGTTTCTGGAATACTCTACTTTG
GTTACATGCTGATTGCTTCATATGCATTTTTTGTACTAACGGGCACCATT
GGATTTTATGCATGCTTTTGG
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