CF834600
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.567e-18 Identity = 53/142 (37.32%), Postives = 82/142 (57.75%), Query Frame = -2 Query: 300 NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 725 NP K+ +A G ++ + K+ RE +I + L +A ++LEDV+A ++ + F R C VG K + GR+PVK+AK IL +L++A++NAE KGL+ + L I HI N+ +R RA GR P HI++ L Sbjct: 14 NPEKTARAMGRNIPISRKHAREICKSINGMKLDEAIKFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_STAMF (50S ribosomal protein L22P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl22p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.490e-18 Identity = 57/150 (38.00%), Postives = 88/150 (58.67%), Query Frame = -2 Query: 300 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 743 YS + + ++ KA D+ V K+ RE AIR +++AK+ LE+V+A ++ IPF R+ G + R AK + P G R+PVK+AK++L LL++ E+NA+ KGLD D L I HI ++ +R RA GR P H+E+ + Sbjct: 6 YSYKLRDESRIAKAVQFDIPVSIKDMREAVAAIRGKKVSEAKKLLENVIALREPIPFKRYKGKLSHKRGLPAKWKWPIG--RYPVKAAKYLLRLLEHVEANADNKGLDKDKLVIVHIAAHKGMTLKRWMPRAFGRATPKFRRTSHVEIVV 153
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.490e-18 Identity = 58/150 (38.67%), Postives = 86/150 (57.33%), Query Frame = -2 Query: 300 YSKEPD--NPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 743 YS P+ + ++ KA +LR+ K+ RE AIR +PL +AK +L V+ ++A+PF + V Q R GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI ++ + R RA GR P+ + HIE+ L Sbjct: 9 YSIPPEELDDERTAKAFIRELRISPKHAREICRAIRGMPLDRAKEFLRRVIRKEEAVPFRKHKKKVPHRRQI--RPGWDAGRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_THEVO (50S ribosomal protein L22P OS=Thermoplasma volcanium GN=rpl22p PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 5.954e-18 Identity = 53/152 (34.87%), Postives = 84/152 (55.26%), Query Frame = -2 Query: 297 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 752 M YS D + +AR + + K+ AH IR + L AK+ LEDV++ K AIP+ R+ V +R G GR+PVK+AK +DLL N E+NAE KG++ D+L I H+ N+ + ++ T +A+GR ++E+ ++ Sbjct: 1 MKGYSMSVDE--NNARARIVEADISLKDAVNIAHHIRGMKLDYAKQILEDVVSKKYAIPYFRYLDSVS------HRPGKGPGRYPVKAAKVFIDLLSNVENNAEFKGMNTDSLIIKHVAANKGRMIKKYTPKAYGRAGANFKDLINLEVIVT 144
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.326e-17 Identity = 55/152 (36.18%), Postives = 87/152 (57.24%), Query Frame = -2 Query: 300 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 749 VKY+ + ++ + + +A + L++ K+ E IR + L KAK+YLE+V+ ++ + F R+ VG R NG GR+PVK+A IL +L+NAE+NAE KGLD + L I HI ++ R RA GR P+ + H+++ L Sbjct: 4 VKYAYKEEDRSGTARASATHLKISPKHAVEICREIRGMELEKAKKYLEEVIRMERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1) HSP 1 Score: 88.9669 bits (219), Expect = 3.859e-17 Identity = 56/148 (37.84%), Postives = 78/148 (52.70%), Query Frame = -2 Query: 300 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 743 YS + +P + +A G DLR+ K E +R + L A RYL++V+A K+ +P R+ G K G GR+PVK AK I +L NA++NAE KGLD D L I HI ++ R RA GR P+ HIE+ + Sbjct: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDEVIALKRPVPLRRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17 Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = -2 Query: 306 KYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 746 +YS E + P ++ KA D+ + +K T ET I+ + +A+R L ++ K+++P R+ VG + G GR+PVK AK +L LL N E+NAE KGL+V+ L I H ++ K R RA GR PY H+E+ Sbjct: 5 RYSVELE-PERTAKASLRDVSMSYKLTVETLRLIKGKSIEEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 1.123e-16 Identity = 55/148 (37.16%), Postives = 78/148 (52.70%), Query Frame = -2 Query: 300 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 743 YS + +P + +A G DLR+ K E +R + L A RYL+DV+A ++ +P R+ G K G GR+PVK AK I +L NA++NA+ KGLD D L I HI ++ R RA GR P+ HIE+ + Sbjct: 7 YSFQNFDPERMARASGRDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.915e-16 Identity = 54/142 (38.03%), Postives = 79/142 (55.63%), Query Frame = -2 Query: 297 KSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 716 KS KA D + +K E A ++ + + +A+R+LE V ++ IP R+ G R AK + P G R+PVK+AK +L LL N +NAEVKGLD + L I HI V++ + +R RA GR P HIE+ ++ Sbjct: 14 KSAKAMVWDAPISYKKIVELARLLKGMKVDEARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIG--RYPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIVVA 153
BLAST of CF834600 vs. ExPASy Swiss-Prot
Match: RL22_META3 (50S ribosomal protein L22P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl22p PE=3 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 9.505e-16 Identity = 53/150 (35.33%), Postives = 78/150 (52.00%), Query Frame = -2 Query: 300 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 749 + Y E D P K+ +A G LR+ K+T E I + L KA YL V+ KQ +PF R V K ++ GR+P K++ IL +L+NA+ NAE KG++ + L I HI N+ +R RA GR +P H+++ L Sbjct: 4 LNYKVETD-PNKTARAMGRSLRISRKHTIEICREISGMKLDKAIAYLNRVIELKQVVPFKRHGKDV---PHKKGKYGWTAGRFPQKASTQILSVLENAKKNAEYKGMNTEKLRIKHISSNKGFTIKRHMPRAFGRASPKNQETVHVQVIL 149 The following BLAST results are available for this feature:
BLAST of CF834600 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 89
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF834600 ID=CF834600; Name=CF834600; organism=Citrus sinensis; type=EST; length=870bpback to top |