CF834601

Overview
NameCF834601
Unique NameCF834601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1078 contig Csv1_Contig1078:1..712. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.986e-24
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF +F GGVGR A AK    + QGRWP KS KF+LDLL
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIERKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.206e-24
Identity = 58/96 (60.42%), Postives = 70/96 (72.92%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF +F GGVGR A AK    + QGRWP KS KF+LDLL
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIDRKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 7.518e-23
Identity = 52/96 (54.17%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y   P+NP + CKA+G++ RVH+KNT ET  AI+ + L KA+ YL +V+ HKQ IPF R  GGVGR A AKN +   QGRWP KS +F+L LL
Sbjct:    1 MARYKFNPENPNRVCKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 9.190e-21
Identity = 54/96 (56.25%), Postives = 62/96 (64.58%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTA  K      Q RWPVKS KF  DLL
Sbjct:    1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 52/96 (54.17%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF RF   +GRTA  K      + RWP KS KF+  LL
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 53/96 (55.21%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF RF GGVGRTA  K      Q RWPVKS  F  DLL
Sbjct:    1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.016e-19
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YL+ V+ H++AIPF RF   +GRTA  K      + RWP KS KF+  LL
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 49/96 (51.04%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+Y+    NP KS  ARGS LRV +KNTRETA AI    L +A++YL+ V+ H++AIPF RF   +GRT   K      + RWP KS  FI DLL
Sbjct:    1 MVRYAATSANPAKSASARGSYLRVSYKNTRETAQAISGWKLERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 47/96 (48.96%), Postives = 64/96 (66.67%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            MV+Y+     P KS ++RGS LRV FKNTRETA AI    L +A+++LE+V+  K+A+P  R+ GG GR A  K +    + RWP KSA+F+L LL
Sbjct:    1 MVRYAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGK-QFGVSRARWPAKSAEFLLGLL 95          
BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.622e-17
Identity = 47/95 (49.47%), Postives = 63/95 (66.32%), Query Frame = 2
Query:  428 VKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            V+Y+ +     KS +ARGS LRV FKNTRETA AI  + L +A  +LE+V    + +PF R+ G +GRTA  K +    + RWPVKSA+F+LDLL
Sbjct:    9 VRYAAQDIPAAKSARARGSYLRVSFKNTRETAQAINGMKLQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGK-QWGVSKARWPVKSAQFLLDLL 102          
The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_THEPA3.986e-2460.4260S ribosomal protein L17 OS=Theileria parva GN=RP... [more]
RL17_THEAN5.206e-2460.4260S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL17_PECGU7.518e-2354.1760S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17A_SCHPO9.190e-2156.2560S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17A_YEAST4.561e-2054.1760S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17B_SCHPO5.957e-2055.2160S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17B_YEAST1.016e-1953.1360S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17_DEBHA1.467e-1851.0460S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17_NEUCR4.269e-1848.9660S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17_ASPFU1.622e-1749.4760S ribosomal protein L17 OS=Aspergillus fumigatus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bp
TTTTGAGTTTTCAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCA
GTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAG
AGGCAGCATCCAAAATCAGCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACG
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACGATTCTGCGGTGGTGTTGGACGTACTGCTCANGCAAAGAATA
GGCATCCAAATGGACAGGGACGATGGCCTGTCAAATCAGCAAAGTTCATT
CTTGACTTGCTC
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