CF834601

Overview
NameCF834601
Unique NameCF834601
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834601 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 48/96 (50.00%), Postives = 59/96 (61.46%), Query Frame = 2 
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAXAKNRHPNGQGRWPVKSAKFILDLL 712
            M +YS +  +PTK+  ARG+ LR  FKNT E A AIR   L KA  YL+ V  HK+AIPF +  G +GRT   K      + RWPVKS KF+ DLL
Sbjct:    1 MTRYSVQSVDPTKTASARGAYLRTSFKNTYEVAGAIRGWNLQKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVT-KARWPVKSIKFVQDLL 95
The following BLAST results are available for this feature:
BLAST of CF834601 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_YARLI3.614e-1750.0060S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834601 ID=CF834601; Name=CF834601; organism=Citrus sinensis; type=EST; length=712bp
TTTTGAGTTTTCAATACGGTTCAGTCGAAGCCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAGAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGTATGGGTACTGTTATTACCCGTCAATTGTACGATGGTCTCA
GTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAG
AGGCAGCATCCAAAATCAGCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACG
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACGATTCTGCGGTGGTGTTGGACGTACTGCTCANGCAAAGAATA
GGCATCCAAATGGACAGGGACGATGGCCTGTCAAATCAGCAAAGTTCATT
CTTGACTTGCTC
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