CF834603

Overview
NameCF834603
Unique NameCF834603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_AEDAE (60S ribosomal protein L17 OS=Aedes aegypti GN=RpL17 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.648e-21
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKN 649
            M +Y+KEPDNP KSCKARGS+LRVHFKNTRETA AI+++PL +A+++L++V   K+ +PF  F GGVGR A AK+
Sbjct:    1 MGRYAKEPDNPAKSCKARGSNLRVHFKNTRETALAIKRMPLRRAQKFLKNVCEKKECVPFRRFNGGVGRCAQAKH 75          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 49/74 (66.22%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS++P+NP KSCKARGS+LRVHFKNT ETA AIRK+PL +A RYL++V   K+ IPF  F GGVGR A AK
Sbjct:    1 MGRYSRDPENPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.671e-21
Identity = 49/74 (66.22%), Postives = 60/74 (81.08%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS EPDN TKSCKARGS+LRVHFKNTRETA AI+ + L +A+RYL++V+A K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSVEPDNATKSCKARGSNLRVHFKNTRETAQAIKHMALRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_HUMAN (60S ribosomal protein L17 OS=Homo sapiens GN=RPL17 PE=1 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF  + GGVGR A AK
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_FELCA (60S ribosomal protein L17 OS=Felis catus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 101.293 bits (251), Expect = 4.794e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF  + GGVGR A AK
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_RAT (60S ribosomal protein L17 OS=Rattus norvegicus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF  + GGVGR A AK
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF  + GGVGR A AK
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS +P+NPTKSCK+RGS+LRVHFKNTRETA AI+ + + KA +YL+DV   KQ +PF  + GGVGR A AK
Sbjct:    1 MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.262e-21
Identity = 46/75 (61.33%), Postives = 63/75 (84.00%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKN 649
            M +Y+KEPDN +KSCK+RGS+LRVHFKNTRETA AI+++PL +A+R+L++V+  K+ +PF  F GGVGR A AK+
Sbjct:    1 MGRYAKEPDNASKSCKSRGSNLRVHFKNTRETALAIKRMPLRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH 75          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_BIPLU (60S ribosomal protein L17 OS=Biphyllus lunatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.395e-20
Identity = 48/74 (64.86%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +Y++EPDN  KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V A K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYAREPDNAGKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVTAQKECVPFRRFNGGVGRCAQAK 74          
The following BLAST results are available for this feature:
BLAST of CF834603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_AEDAE1.648e-2162.6760S ribosomal protein L17 OS=Aedes aegypti GN=RpL1... [more]
RL17_LONON3.671e-2166.2260S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_IXOSC3.671e-2166.2260S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_HUMAN4.794e-2163.5160S ribosomal protein L17 OS=Homo sapiens GN=RPL17... [more]
RL17_FELCA4.794e-2163.5160S ribosomal protein L17 OS=Felis catus GN=RPL17 ... [more]
RL17_RAT6.262e-2163.5160S ribosomal protein L17 OS=Rattus norvegicus GN=... [more]
RL17_MOUSE6.262e-2163.5160S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN6.262e-2163.5160S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_ANOGA6.262e-2161.3360S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_BIPLU1.395e-2064.8660S ribosomal protein L17 OS=Biphyllus lunatus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05M24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834603 ID=CF834603; Name=CF834603; organism=Citrus sinensis; type=EST; length=667bp
TTTTGAGTTTCCCTTATAGTTCAATCGAAGGCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAAAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGGATGGGTACTGTTATTACCCGTCTATTGTACGATGGTCTCA
CTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAT
AGGCAGCATCCAAAATCATCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACT
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACCATTCTGCGGTGGTGTTGGACGTACTGCTCCGGCAAAGAATA
CGCATCCAAATGGACAG
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