CF834603

Overview
NameCF834603
Unique NameCF834603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.822e-20
Identity = 46/71 (64.79%), Postives = 57/71 (80.28%), Query Frame = 2
Query:  434 YSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            YSK P NP KSCK+RGS+LR+HFKNTRE+A AI+ + LT+AK YL +V+AH++ IPF  F GGVGRT  AK
Sbjct:    6 YSKTPSNPEKSCKSRGSNLRIHFKNTRESAMAIKGMLLTRAKAYLNNVLAHRECIPFRRFKGGVGRTGQAK 76          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_AGRLI (60S ribosomal protein L17 OS=Agriotes lineatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.379e-20
Identity = 47/74 (63.51%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+EP+   KSCKARGS+LRVHFKNT ETA+AIRK+PL +A  YL++V+ HK+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSREPEIAAKSCKARGSNLRVHFKNTCETANAIRKMPLKRAVAYLKNVIGHKECVPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.181e-19
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +Y++EPDN TKSCK+RGS LRVHFKNT E A+AI+ +PL +A+R+L++V+  K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYAREPDNATKSCKSRGSHLRVHFKNTHEAANAIKHMPLRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.542e-19
Identity = 46/74 (62.16%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YSKEP NPTKSCKARGS+LRVHFKNTRETA  I K+PL +A ++L++V    + +PF  + GGVGR A AK
Sbjct:    1 MGRYSKEPRNPTKSCKARGSNLRVHFKNTRETAKTISKMPLRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DROPS (60S ribosomal protein L17 OS=Drosophila pseudoobscura pseudoobscura GN=RpL17 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.014e-19
Identity = 45/74 (60.81%), Postives = 58/74 (78.38%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+E DN TKSCKARG +LRVHFKNT ETA AI+++PL +A+R+L+ V+  K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSRESDNVTKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRFLKAVIDQKECVPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DROYA (60S ribosomal protein L17 OS=Drosophila yakuba GN=RpL17 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DROME (60S ribosomal protein L17 OS=Drosophila melanogaster GN=RpL17 PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.631e-19
Identity = 45/74 (60.81%), Postives = 57/74 (77.03%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+E DN  KSCKARG +LRVHFKNT ETA AI+++PL +A+RYL+ V+  K+ +PF  F GGVGR A AK
Sbjct:    1 MGRYSRESDNVAKSCKARGPNLRVHFKNTHETAQAIKRMPLRRAQRYLKAVIDQKECVPFRRFNGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.436e-19
Identity = 44/75 (58.67%), Postives = 54/75 (72.00%), Query Frame = 2
Query:  422 TMVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            T V YS+ P+N TKSCKARGSDLRVHFKNT E A A+R +PL +A+ +L  V  HK+ +PF  F GG+GR A  K
Sbjct:    2 TKVHYSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTK 76          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_CARGR (60S ribosomal protein L17 OS=Carabus granulatus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.861e-19
Identity = 44/74 (59.46%), Postives = 59/74 (79.73%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS+EPD  +K+CKARGS+LRVHFKNTRETA AI+K+ L +A+ +L++V  HK+ +PF  F GGVGR + AK
Sbjct:    1 MGRYSREPDVASKTCKARGSNLRVHFKNTRETAMAIKKMSLRRAQAFLKNVTDHKECVPFRRFNGGVGRCSQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_MACHI (60S ribosomal protein L17 OS=Maconellicoccus hirsutus GN=RpL17 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.105e-17
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M KY+K   NP KSC+ARGS+LRVHFKNTRETA  I+++PL +A ++L++V   ++ +PF  F GGVGR A AK
Sbjct:    1 MGKYAKNARNPAKSCRARGSNLRVHFKNTRETAKTIKRMPLRRAIQFLKNVQDKQECVPFRRFNGGVGRCAQAK 74          
The following BLAST results are available for this feature:
BLAST of CF834603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_DICDI1.822e-2064.7960S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_AGRLI2.379e-2063.5160S ribosomal protein L17 OS=Agriotes lineatus GN=... [more]
RL17_PHLPP1.181e-1959.4660S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_DIACI1.542e-1962.1660S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17_DROPS2.014e-1960.8160S ribosomal protein L17 OS=Drosophila pseudoobsc... [more]
RL17_DROYA2.631e-1960.8160S ribosomal protein L17 OS=Drosophila yakuba GN=... [more]
RL17_DROME2.631e-1960.8160S ribosomal protein L17 OS=Drosophila melanogast... [more]
RL17_CAEEL3.436e-1958.6760S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_CARGR5.861e-1959.4660S ribosomal protein L17 OS=Carabus granulatus GN... [more]
RL17_MACHI1.105e-1756.7660S ribosomal protein L17 OS=Maconellicoccus hirsu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05M24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834603 ID=CF834603; Name=CF834603; organism=Citrus sinensis; type=EST; length=667bp
TTTTGAGTTTCCCTTATAGTTCAATCGAAGGCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAAAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGGATGGGTACTGTTATTACCCGTCTATTGTACGATGGTCTCA
CTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAT
AGGCAGCATCCAAAATCATCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACT
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACCATTCTGCGGTGGTGTTGGACGTACTGCTCCGGCAAAGAATA
CGCATCCAAATGGACAG
back to top