CF834603

Overview
NameCF834603
Unique NameCF834603
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length667
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1078 contig Csv1_Contig1078:1..667. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.462e-17
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF  F GGVGR A AK
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIERKRCVPFRKFRGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_THEAN (60S ribosomal protein L17 OS=Theileria annulata GN=RPL17 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.216e-17
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MVKYS+EP N T+S KA G+ LRVHFKNT ETA AI+ + +  AKRYL DV+  K+ +PF  F GGVGR A AK
Sbjct:    1 MVKYSREPSNLTRSAKAYGAYLRVHFKNTYETATAIKGMLVKDAKRYLNDVIDRKRCVPFRKFRGGVGRCAQAK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 9.357e-17
Identity = 40/75 (53.33%), Postives = 52/75 (69.33%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAKN 649
            M +Y   P+NP + CKA+G++ RVH+KNT ET  AI+ + L KA+ YL +V+ HKQ IPF    GGVGR A AKN
Sbjct:    1 MARYKFNPENPNRVCKAKGTNFRVHYKNTSETGRAIKGMHLHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKN 75          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 82.8037 bits (203), Expect = 1.765e-15
Identity = 42/74 (56.76%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YLE V+ H++AIPF  F   +GRTA  K
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.931e-15
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +Y     NP KS  ARGS LRV FKNTRETA AI    LTKA++YL+ V+ H++AIPF  F   +GRTA  K
Sbjct:    1 MARYGATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.144e-14
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF  F GGVGRTA  K
Sbjct:    1 MVRYSASPALETKCAKARGAYLRTHFKNSREVAFTINGMSLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.951e-14
Identity = 41/74 (55.41%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+YS  P   TK  KARG+ LR HFKN+RE A  I  + L KA  +L++V  HKQA+PF  F GGVGRTA  K
Sbjct:    1 MVRYSAAPALETKCAKARGAYLRTHFKNSREVAFTINGMNLKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.265e-13
Identity = 38/74 (51.35%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+Y+    NP KS  ARGS LRV +KNTRETA AI    L +A++YL+ V+ H++AIPF  F   +GRT   K
Sbjct:    1 MVRYAATSANPAKSASARGSYLRVSYKNTRETAQAISGWKLERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_NEUCR (60S ribosomal protein L17 OS=Neurospora crassa GN=rpl-17 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.071e-12
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            MV+Y+     P KS ++RGS LRV FKNTRETA AI    L +A+++LE+V+  K+A+P   + GG GR A  K
Sbjct:    1 MVRYAATEIAPAKSARSRGSYLRVSFKNTRETAQAINGWKLQRAQKFLENVLEKKEAVPMRRYAGGTGRAAQGK 74          
BLAST of CF834603 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.939e-12
Identity = 37/74 (50.00%), Postives = 45/74 (60.81%), Query Frame = 2
Query:  425 MVKYSKEPDNPTKSCKARGSDLRVHFKNTRETAHAIRKLPLTKAKRYLEDVMAHKQAIPFTPFCGGVGRTAPAK 646
            M +YS +  +PTK+  ARG+ LR  FKNT E A AIR   L KA  YL+ V  HK+AIPF    G +GRT   K
Sbjct:    1 MTRYSVQSVDPTKTASARGAYLRTSFKNTYEVAGAIRGWNLQKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGK 74          
The following BLAST results are available for this feature:
BLAST of CF834603 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
RL17_THEPA2.462e-1760.8160S ribosomal protein L17 OS=Theileria parva GN=RP... [more]
RL17_THEAN3.216e-1760.8160S ribosomal protein L17 OS=Theileria annulata GN... [more]
RL17_PECGU9.357e-1753.3360S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17A_YEAST1.765e-1556.7660S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17B_YEAST3.931e-1555.4160S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17A_SCHPO1.144e-1455.4160S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17B_SCHPO1.951e-1455.4160S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_DEBHA1.265e-1351.3560S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17_NEUCR1.071e-1248.6560S ribosomal protein L17 OS=Neurospora crassa GN=... [more]
RL17_YARLI6.939e-1250.0060S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05M24_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05M24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834603 ID=CF834603; Name=CF834603; organism=Citrus sinensis; type=EST; length=667bp
TTTTGAGTTTCCCTTATAGTTCAATCGAAGGCAGCAGAAATCTTTTGCCT
TCCTGATTTGAAGATTATGGGAACTCCTTGCGCAGGTTATACCGATTGGT
CGGAGGGTGGGGCCCCCCCATGGTTTTCACTTATTGCTGATGATGAAATT
AATGGAAATATTGATCTTCTTGTAGTCCCACAATATGGAAGAAACCCTGA
TCACACTGGTTAAAAATATGCAGTATTAGTCTCTTATGTTATGTTTAAGA
AAATAAAAGGATGGGTACTGTTATTACCCGTCTATTGTACGATGGTCTCA
CTTTGGTTCAGTTTAACTTGTAAGATCTCTTGATATATACAAGAGATTCT
CTTTGTCTAGCTATTAAAAAAAGGAAAGCAAACCCACTTCACTGATACAT
AGGCAGCATCCAAAATCATCCACCATGGTGAAGTACTCAAAAGAGCCTGA
CAATCCTACCAAGTCCTGCAAAGCCAGGGGCTCTGATCTCAGGGTTCATT
TTAAGAACACGAGAGAAACTGCCCATGCCATCAGGAAATTGCCTTTGACT
AAGGCTAAGAGGTATTTGGAGGATGTTATGGCCCATAAACAGGCCATTCC
CTTCACACCATTCTGCGGTGGTGTTGGACGTACTGCTCCGGCAAAGAATA
CGCATCCAAATGGACAG
back to top