CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2) HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25 Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = -1 Query: 301 SNG--GRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFE-LEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 684 SNG + + M VW P K FET SYLPPL+D+ + K+++ ++R+ W PCLEF ++ +V + G D RYWTMWKLPM+GC D QVL E+ K +P +++R++ FD RQVQ F+ +P Sbjct: 26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25 Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET SYLPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL ++ K +P +++R++ FD RQVQ F+ +PP Sbjct: 44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25 Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET S+LPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25 Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET S+LPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24 Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET S+LPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21 Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -1 Query: 301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633 +++ETLSYLPPLSD+ + ++I ++R G+IP +EF + YWTMWKLP++ T +VL EV E + EYP+ ++R++GFDN +Q Q +SFI KP Sbjct: 8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21 Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = -1 Query: 298 SYLPPLSDEALLKEINSLIRSGWIPCLEFELEK-------GWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 615 SYLPPL+DE + K+++ ++ + W PCLEF + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20 Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -1 Query: 301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633 +++ETLSYLPPL+D+ + K++ L+ G+IP +EFE +P + +WTMWKLP +G A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI KP Sbjct: 8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFE-------EDPQP-----ETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20 Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = -1 Query: 301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633 K++ETLSYLPPLSD+ + +++ ++ G+IP +EFE ++P + +WT+WKLP++ + A +VL EV E + EY ++R++GFDN +Q Q +SFI KP Sbjct: 8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE-------KDPTP-----ELHHWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3) HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19 Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -1 Query: 301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633 ++FET SYLPPLSD + +I +I G+ P +EF H +P + YWTMWKLP++ C QVL EV E + EY ++R+ GFDN +Q Q +SFI +P Sbjct: 10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |