CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_BATOE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Batophora oerstedii GN=RBCS PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.234e-25
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = -1
Query:  301 SNG--GRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFE-LEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 684
            SNG   + + M VW P   K FET SYLPPL+D+ + K+++ ++R+ W PCLEF   ++ +V  +     G       D RYWTMWKLPM+GC D  QVL E+    K +P +++R++ FD  RQVQ   F+  +P
Sbjct:   26 SNGTISKSRAMMVWEPFNNKFFETFSYLPPLTDDQITKQVDYILRNNWTPCLEFAGSDQAYVTHDNTVRMGDCASTYQDNRYWTMWKLPMFGCIDGSQVLTEISACTKAFPDAYIRLVCFDANRQVQISGFLVHRP 161          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS7_ACECL (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Acetabularia cliftonii GN=RBCS-7 PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET SYLPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL ++    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSDMQACTKAFPDAYIRLVCFDANRQVQICGFLVHRPP 170          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_ACEAT (Ribulose bisphosphate carboxylase small chain 2, chloroplastic (Fragment) OS=Acetabularia acetabulum GN=RBCS-2 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET S+LPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   34 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 160          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ACEAT (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Acetabularia acetabulum GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.918e-25
Identity = 55/128 (42.97%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET S+LPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILTNSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_ACEAT (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia acetabulum GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.109e-24
Identity = 54/128 (42.19%), Postives = 75/128 (58.59%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET S+LPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   44 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_PROHO (Ribulose bisphosphate carboxylase small chain OS=Prochlorothrix hollandica GN=cbbS PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.957e-21
Identity = 47/111 (42.34%), Postives = 70/111 (63.06%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            +++ETLSYLPPLSD+ + ++I  ++R G+IP +EF  +                  YWTMWKLP++  T   +VL EV E + EYP+ ++R++GFDN +Q Q +SFI  KP
Sbjct:    8 RRYETLSYLPPLSDQQIARQIEYMVREGYIPAVEFNEDSDATTC------------YWTMWKLPLFHATSTQEVLGEVRECRTEYPNCYIRVVGFDNIKQCQSVSFIVHKP 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ACECL (Ribulose bisphosphate carboxylase small chain 1 (Fragment) OS=Acetabularia cliftonii GN=RBCS-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 48/113 (42.48%), Postives = 67/113 (59.29%), Query Frame = -1
Query:  298 SYLPPLSDEALLKEINSLIRSGWIPCLEFELEK-------GWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 615
            SYLPPL+DE + K+++ ++ + W PCLEF             +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:    2 SYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNDNCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 113          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNY3 (Ribulose bisphosphate carboxylase small chain OS=Synechocystis sp. (strain PCC 6803) GN=cbbS PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.164e-20
Identity = 48/111 (43.24%), Postives = 71/111 (63.96%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            +++ETLSYLPPL+D+ + K++  L+  G+IP +EFE        +P       +  +WTMWKLP +G   A +VL EV E + E P+ ++R+IGFDN +Q Q +SFI  KP
Sbjct:    8 RRYETLSYLPPLTDQQIAKQVEFLLDQGFIPGVEFE-------EDPQP-----ETHFWTMWKLPFFGGATANEVLAEVRECRSENPNCYIRVIGFDNIKQCQTVSFIVHKP 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNP2 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=cbbS PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.820e-20
Identity = 45/111 (40.54%), Postives = 72/111 (64.86%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            K++ETLSYLPPLSD+ + +++  ++  G+IP +EFE       ++P       +  +WT+WKLP++  + A +VL EV E + EY   ++R++GFDN +Q Q +SFI  KP
Sbjct:    8 KRYETLSYLPPLSDQQIARQVQYMMDQGYIPGIEFE-------KDPTP-----ELHHWTLWKLPLFNASSAQEVLNEVRECRSEYSDCYIRVVGFDNIKQCQTVSFIVYKP 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SYNP6 (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=cbbS PE=1 SV=3)

HSP 1 Score: 96.2857 bits (238), Expect = 1.832e-19
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            ++FET SYLPPLSD  +  +I  +I  G+ P +EF           H +P  +   YWTMWKLP++ C    QVL EV E + EY   ++R+ GFDN +Q Q +SFI  +P
Sbjct:   10 RRFETFSYLPPLSDRQIAAQIEYMIEQGFHPLIEFN---------EHSNPEEF---YWTMWKLPLFDCKSPQQVLDEVRECRSEYGDCYIRVAGFDNIKQCQTVSFIVHRP 108          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_BATOE2.234e-2541.91Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS7_ACECL2.918e-2542.97Ribulose bisphosphate carboxylase small chain 7, c... [more]
RBS2_ACEAT2.918e-2542.97Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS1_ACEAT2.918e-2542.97Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS5_ACEAT1.109e-2442.19Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_PROHO1.957e-2142.34Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_ACECL3.338e-2142.48Ribulose bisphosphate carboxylase small chain 1 (F... [more]
RBS_SYNY32.164e-2043.24Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP24.820e-2040.54Ribulose bisphosphate carboxylase small chain OS=S... [more]
RBS_SYNP61.832e-1942.34Ribulose bisphosphate carboxylase small chain OS=S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
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