CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.961e-19
Identity = 44/111 (39.64%), Postives = 69/111 (62.16%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            +++ETLSYLPPL+D  + K++  ++  G+IP +EF         EP +        YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q +SFI  KP
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN-----EVSEPTEL-------YWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKP 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.819e-17
Identity = 38/113 (33.63%), Postives = 68/113 (60.18%), Query Frame = -1
Query:  301 VLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 639
            V +KFET SYLPPL+D+ + +++   + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ + F+  KP
Sbjct:    5 VERKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFLVYKP 105          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.509e-17
Identity = 43/106 (40.57%), Postives = 59/106 (55.66%), Query Frame = -1
Query:  313 KFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFI 630
            KFETLSYLP L+ + + +++  ++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q  S +
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQGTSLV 111          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.737e-15
Identity = 39/111 (35.14%), Postives = 61/111 (54.95%), Query Frame = -1
Query:  301 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 633
            K+FET SYLP +S E + K+I  ++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q  + +  +P
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQGTAMLVYRP 122          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 80.4925 bits (197), Expect = 1.040e-14
Identity = 39/100 (39.00%), Postives = 54/100 (54.00%), Query Frame = -1
Query:  334 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 633
            +KFET SYLP +  + + K++  ++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.358e-14
Identity = 41/112 (36.61%), Postives = 56/112 (50.00%), Query Frame = -1
Query:  298 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 633
            +KFET SYLP L  E + K++  ++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q  + +  + P
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQGTAMVIFRGP 116          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.742e-14
Identity = 31/59 (52.54%), Postives = 41/59 (69.49%), Query Frame = -1
Query:  298 DGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 474
            D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   15 DNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 73          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.962e-13
Identity = 38/102 (37.25%), Postives = 54/102 (52.94%), Query Frame = -1
Query:  328 KKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 633
            +KFET SYLP ++   + K++  L+  GW P +E            H  P      YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.562e-13
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = -1
Query:  301 KFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 630
            ++ET SYLPPL+ E +L++I  ++ +GW   LE            H+ P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +  SF+A +P
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLAHRP 112          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.346e-13
Identity = 37/103 (35.92%), Postives = 54/103 (52.43%), Query Frame = -1
Query:  316 ETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISF 624
            ET S+LP  + + +  +I  +I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q  +F
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQGHNF 105          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_ANASP6.961e-1939.64Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA3.819e-1733.63Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS2_THIFE8.509e-1740.57Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_PSEHY2.737e-1535.14Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS1_CHRVI1.040e-1439.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_ALVHS1.358e-1436.61Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS2_ACECL6.742e-1452.54Ribulose bisphosphate carboxylase small chain 2 (F... [more]
RBS_THIDA1.962e-1337.25Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS2_CHRVI2.562e-1334.55Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_HYDMR3.346e-1335.92Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
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