CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2B_ARATH (Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2) HSP 1 Score: 229.18 bits (583), Expect = 1.811e-59 Identity = 105/145 (72.41%), Postives = 122/145 (84.14%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 +FP T+K+NNDI+SI SNGGRV CMKVWPP KKFETLSYLP LSD L KE++ L+R+ WIPC+EFELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP Sbjct: 32 SFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_RAPSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59 Identity = 105/145 (72.41%), Postives = 122/145 (84.14%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 AFP T+K+N DI+SIASNGGRV CMKVWPP KKFETLSYLP LSD L KE++ L+R+ WIPC+EFELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++ +RIIGFDN RQVQCISFIA KPP Sbjct: 32 AFPVTRKTNTDITSIASNGGRVSCMKVWPPIGKKKFETLSYLPDLSDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS8_NICPL (Ribulose bisphosphate carboxylase small chain 8B, chloroplastic OS=Nicotiana plumbaginifolia GN=RBCS-8B PE=3 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59 Identity = 106/146 (72.60%), Postives = 121/146 (82.88%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP ++K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP LS E LL EI L++SGW+PCLEFE E+G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 34 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSQEQLLSEIEYLLKSGWVPCLEFETERGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_SOLLC (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Solanum lycopersicum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 228.794 bits (582), Expect = 2.365e-59 Identity = 106/147 (72.11%), Postives = 125/147 (85.03%), Query Frame = -1 Query: 295 AFPATKKSNN-DISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP TKK+NN DI+S+ASNGGRV+CM+VWPP +KK+ETLSYLP LSDE LL EI L+++GW+PCLEFE E+G+VYRE + SPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP ++VRIIGFDN RQVQCISFIA KP G Sbjct: 34 SFPVTKKNNNVDITSLASNGGRVRCMQVWPPINMKKYETLSYLPDLSDEQLLSEIEYLLKNGWVPCLEFETERGFVYRENNSSPGYYDGRYWTMWKLPMFGCTDATQVLAEVQEAKKAYPQAWVRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_SOYBN (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Glycine max GN=RBCS-1 PE=3 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.088e-59 Identity = 107/145 (73.79%), Postives = 121/145 (83.45%), Query Frame = -1 Query: 295 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 729 FP T+K+NNDI+SIASNGGRVQCM+VWPP KKFETLSYLP L D L KE+ L+R GWIPCLEFELE G+VYRE ++SP YDGRYWTMWKLPM+GCTDA QVLKE+ E + YP+ F+RIIGFDN RQVQCISFIA KPPG Sbjct: 34 FP-TRKTNNDITSIASNGGRVQCMQVWPPIGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSPXYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPPG 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1B_ARATH (Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 4.034e-59 Identity = 104/145 (71.72%), Postives = 122/145 (84.14%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 +FP T+K+NNDI+SI SNGGRV CMKVWPP KKFETLSYLP L+D L KE++ L+R+ WIPC+EFELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP +F+RIIGFDN RQVQCISFIA KPP Sbjct: 32 SFPVTRKANNDITSITSNGGRVSCMKVWPPIGKKKFETLSYLPDLTDVELAKEVDYLLRNKWIPCVEFELEHGFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_BRANA (Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 5.268e-59 Identity = 104/145 (71.72%), Postives = 123/145 (84.83%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 AFP T+K+NNDI+SIASNGGRV CMKVWPP KKFETLSYLP L++ L KE++ L+R+ WIPC+EFELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E + EYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 32 AFPVTRKANNDITSIASNGGRVSCMKVWPPVGKKKFETLSYLPDLTEVELGKEVDYLLRNKWIPCVEFELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_NICSY (Ribulose bisphosphate carboxylase small chain S41, chloroplastic OS=Nicotiana sylvestris PE=3 SV=1) HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59 Identity = 103/146 (70.55%), Postives = 123/146 (84.25%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 +FP ++K N DI+SIASNGGRVQCM+VWPP KK+ETLSYLP LS+E LL+E+ L+++GW+PCLEFE E G+VYRE +KSPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP G Sbjct: 35 SFPVSRKQNLDITSIASNGGRVQCMQVWPPINKKKYETLSYLPDLSEEQLLREVEYLLKNGWVPCLEFETEHGFVYRENNKSPGYYDGRYWTMWKLPMFGCTDATQVLAEVEEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKPEG 180
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_CAPAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Capsicum annuum GN=RBCS PE=2 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 1.174e-58 Identity = 104/144 (72.22%), Postives = 120/144 (83.33%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 +FP T+K + DI+SIASNGGRV+CM VWPP KK+ETLSYLP LSDE LLKEI L++ GW+PCLEFE E G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVL EV E +K YP +++RIIGFDN RQVQCISFIA KP Sbjct: 34 SFPVTRKQDLDITSIASNGGRVECMLVWPPINKKKYETLSYLPDLSDEQLLKEIEYLLQKGWVPCLEFETEHGFVYREHHRSPGYYDGRYWTMWKLPMFGCTDATQVLNEVQEAKKAYPQAWIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_MUSAC (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Musa acuminata GN=RBCS1 PE=2 SV=1) HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58 Identity = 106/146 (72.60%), Postives = 121/146 (82.88%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFP T+K N D+S + SNGGRVQCMKVWP +KKFETLSYLP + DEAL+K+I L+RS WIPCLEF KG+V+RE H+SPG YDGRYWTMWKLPM+GCTDA QV KEV E +KEYPH+F+RIIGFDN RQVQCISFIA KP G Sbjct: 35 AFPVTRKPNADLSHLPSNGGRVQCMKVWPIEGVKKFETLSYLPTMKDEALVKQIEYLLRSKWIPCLEF-CPKGFVWRENHRSPGYYDGRYWTMWKLPMFGCTDAVQVAKEVEECKKEYPHAFIRIIGFDNNRQVQCISFIAYKPTG 179 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |