CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_SOYBN (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Glycine max GN=RBCS-4 PE=3 SV=1) HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58 Identity = 104/141 (73.76%), Postives = 118/141 (83.69%), Query Frame = -1 Query: 298 TKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 720 T+K+NNDI+SIASNGGRVQCM+VWPP KKFETLSYLP L D L KE+ L+R GWIPCLEFELE G+VYRE ++S G YDGRYWTMWKLPM+GCTDA QVLKE+ E + YP+ F+RIIGFDN RQVQCISFIA KPP Sbjct: 36 TRKTNNDITSIASNGGRVQCMQVWPPVGKKKFETLSYLPDLDDAQLAKEVEYLLRKGWIPCLEFELEHGFVYREHNRSLGYYDGRYWTMWKLPMFGCTDASQVLKELQEAKTAYPNGFIRIIGFDNVRQVQCISFIAYKPP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40B, chloroplastic OS=Lemna gibba GN=SSU40B PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 4.460e-58 Identity = 104/143 (72.73%), Postives = 120/143 (83.92%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FPAT+K+NND+S++ SNGGRV CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 35 FPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_HELAN (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1) HSP 1 Score: 223.787 bits (569), Expect = 7.607e-58 Identity = 101/146 (69.18%), Postives = 123/146 (84.25%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFP TKK+N D S++ SNGGRVQCMKVWPP LKK+ETLSYLPPL++ L KE++ L+R W+PCLEFELE G+VYRE +SPG YDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++P G Sbjct: 33 AFPTTKKAN-DFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQLAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRPDG 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_HEVBR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hevea brasiliensis GN=RBCS PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57 Identity = 103/146 (70.55%), Postives = 119/146 (81.51%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFP T+K+ DI+SIASNGGRVQCM+VWPP K +ETLSYLPPL+ E L KE+ L+R GW+PCLEFELE G VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVL+E+ E+ K YP + RIIGFDN RQVQCISF+A KP G Sbjct: 36 AFPTTRKTTTDITSIASNGGRVQCMQVWPPRGKKFYETLSYLPPLTREQLAKEVEYLLRKGWVPCLEFELEHGTVYREYHRSPGYYDGRYWTMWKLPMFGCTDAVQVLQELDEMIKAYPDCYGRIIGFDNVRQVQCISFLAYKPKG 181
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_MESCR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 223.016 bits (567), Expect = 1.298e-57 Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP T+K NNDI+S+ASNGGRVQCM+VWPP +KKFETLSYLPPLS+E+LLKE+ L+ +GW+PCLEFE G+VYRE +PG YDGRYWTMWKLPM+GCTD QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP Sbjct: 36 AFPVTRK-NNDITSVASNGGRVQCMQVWPPLGMKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_TRIRP (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57 Identity = 102/143 (71.33%), Postives = 120/143 (83.92%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP TKK NNDI+SI SNG RV CM+VWPP KKFETLSYLPPL+DE LLKE+ L+R GW+PC+EFELEKG+V+R+ + SPG YDGRYWTMW+LP++G TDA QVLKEV E + EYP +F+RIIGFDN RQVQCISFIA+ P Sbjct: 34 FPVTKK-NNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQLLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLKEVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTP 175
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_CUCSA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Cucumis sativus GN=RBCS PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57 Identity = 96/143 (67.13%), Postives = 123/143 (86.01%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP T+K+N DI+++ASN G+VQCMKVWPP L+KFETLSYLP +S+E L KE + L+R+GW+PC+EF++ G+VYRE H+SPG YDGRYWTMWKLPM+GCTD+ QV++E+ E +KEYP +F+R+IGFDN RQVQCISFIA KP Sbjct: 37 FPITRKNNVDITTLASNAGKVQCMKVWPPLGLRKFETLSYLPDMSNEQLSKECDYLLRNGWVPCVEFDIGSGFVYRENHRSPGFYDGRYWTMWKLPMFGCTDSSQVIQEIEEAKKEYPDAFIRVIGFDNVRQVQCISFIAYKP 179
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_FLAPR (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Flaveria pringlei GN=RBCS4 PE=2 SV=1) HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57 Identity = 102/146 (69.86%), Postives = 124/146 (84.93%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFPATKK+N D S++ SNGGRVQCMKVWPP KK+ETLSYLP L++ L KE++ L+R+ W+PCLEFELE G+VYRE +SPG YDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 33 AFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKKYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS6_MESCR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57 Identity = 98/144 (68.06%), Postives = 120/144 (83.33%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP T+KS+ND+S++ SNGG+VQCM+VWPP KKFETLSYLPPLS+E+LLKE+ L+ +GW+PCLEFE G+VYRE +PG YDGRYWTMWKLPM+GCTD QV+ E+ E +K YP +F+RIIGFDN RQVQC+SFIA KP Sbjct: 38 AFPVTRKSSNDLSTVPSNGGKVQCMQVWPPLGKKKFETLSYLPPLSEESLLKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCVSFIAYKP 181
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SILPR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Silene pratensis GN=RBCS PE=2 SV=1) HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57 Identity = 104/144 (72.22%), Postives = 119/144 (82.64%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP ++KSN DI+S+A+NGGRV CM+VWPP LKKFETLSYLP LS+E+LLKEIN L+ GW+PCLEFE+ VYRE +KSPG YDGRYWTMWKLPM+GCTDA QV EV E + YP + VRIIGFDNKRQVQCISFIA KP Sbjct: 33 AFPVSRKSNVDITSLATNGGRVNCMQVWPPRNLKKFETLSYLPTLSEESLLKEINYLLIKGWVPCLEFEVGPAHVYRENNKSPGYYDGRYWTMWKLPMFGCTDASQVAAEVVECKNAYPDAHVRIIGFDNKRQVQCISFIAYKP 176 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |