CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2) HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57 Identity = 103/144 (71.53%), Postives = 121/144 (84.03%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFPAT+K+NND+S++ S+GGRV CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE + SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 30 AFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 172
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_MESCR (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57 Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP T+K NNDI+S+ASNGGRVQCM+VWPP KKFETLSYLPPLS+E+L+KE+ L+ +GW+PCLEFE G+VYRE +PG YDGRYWTMWKLPM+GCTD QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP Sbjct: 36 AFPVTRK-NNDITSVASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_LEMGI (Ribulose bisphosphate carboxylase small chain SSU40A, chloroplastic OS=Lemna gibba GN=SSU40A PE=3 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57 Identity = 102/143 (71.33%), Postives = 119/143 (83.22%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FPAT+K+NN++S++ NGGRV CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 35 FPATRKANNNLSTLPGNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_FLAPR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Flaveria pringlei GN=RBCS2 PE=2 SV=1) HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57 Identity = 101/146 (69.18%), Postives = 124/146 (84.93%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFPATKK+N D S++ SNGGRVQCMKVWPP K++ETLSYLP L++ L KE++ L+R+ W+PCLEFELE G+VYRE +SPG YDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 33 AFPATKKAN-DFSTLPSNGGRVQCMKVWPPLGKKRYETLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPEG 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_MESCR (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-1 PE=2 SV=2) HSP 1 Score: 221.09 bits (562), Expect = 4.931e-57 Identity = 101/144 (70.14%), Postives = 120/144 (83.33%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP TKK NNDI+S+A+NGGRVQCM+VWPP KKFETLSYLPPLS+E+L+KE+ L+ +GW+PCLEFE G+VYRE +PG YDGRYWTMWKLPM+GCTD QV+ E+ E +K YP +F+RIIGFDN RQVQCISFIA KP Sbjct: 35 AFPVTKK-NNDITSVATNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFIRIIGFDNVRQVQCISFIAYKP 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_MESCR (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Mesembryanthemum crystallinum GN=RBCS-2 PE=2 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 6.440e-57 Identity = 103/144 (71.53%), Postives = 119/144 (82.64%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFP TKKSN DI+SIASNGGRVQCM+VWPP KKFETLSYLPPLS+E+L+KE+ L+ +GW+PCLEFE G+VYRE +PG YDGRYWTMWKLPM+GCTD QV+ E+ E +K YP +F RIIGFDN RQVQCISFIA KP Sbjct: 33 AFPVTKKSN-DITSIASNGGRVQCMQVWPPLGKKKFETLSYLPPLSEESLMKEVQYLLNNGWVPCLEFEPTHGFVYREHGNTPGYYDGRYWTMWKLPMFGCTDPSQVVAELEEAKKAYPEAFTRIIGFDNVRQVQCISFIAYKP 175
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_LEMGI (Ribulose bisphosphate carboxylase small chain SSU26, chloroplastic OS=Lemna gibba GN=SSU26 PE=3 SV=1) HSP 1 Score: 220.705 bits (561), Expect = 6.440e-57 Identity = 102/144 (70.83%), Postives = 120/144 (83.33%), Query Frame = -1 Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732 AFPAT+K+N ++S++ SNGG+V CM+VWPP LKKFETLSYLPPLS E L KE++ L+R+ W+PC+EF E G+VYRE H SPG YDGRYWTMWKLPM+GCTDA QV+ EV E +K YP FVRIIGFDNKRQVQCISFIA KP Sbjct: 34 AFPATRKANKNLSTLPSNGGKVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKP 176
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_PEA (Ribulose bisphosphate carboxylase small chain 3A, chloroplastic OS=Pisum sativum GN=RBCS-3A PE=3 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57 Identity = 105/143 (73.43%), Postives = 118/143 (82.52%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP KK N DI+SI SNGGRV+CM+VWPP KKFETLSYLPPL+ + LLKE+ L+R GW+PCLEFELEKG+VYRE +KSPG YDGRYWTMWKLPM+G TDA QVLKE+ EV YP +FVRIIGFDN RQVQCISFIA P Sbjct: 36 FPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_PEA (Ribulose bisphosphate carboxylase small chain 3C, chloroplastic OS=Pisum sativum GN=RBCS-3C PE=2 SV=1) HSP 1 Score: 220.32 bits (560), Expect = 8.411e-57 Identity = 105/143 (73.43%), Postives = 118/143 (82.52%), Query Frame = -1 Query: 301 FPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP KK N DI+SI SNGGRV+CM+VWPP KKFETLSYLPPL+ + LLKE+ L+R GW+PCLEFELEKG+VYRE +KSPG YDGRYWTMWKLPM+G TDA QVLKE+ EV YP +FVRIIGFDN RQVQCISFIA P Sbjct: 36 FPV-KKVNTDITSITSNGGRVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELEKGFVYREHNKSPGYYDGRYWTMWKLPMFGTTDASQVLKELDEVVAAYPQAFVRIIGFDNVRQVQCISFIAHTP 177
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS7_FLAPR (Ribulose bisphosphate carboxylase small chain 7, chloroplastic OS=Flaveria pringlei GN=RBCS7 PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.098e-56 Identity = 101/146 (69.18%), Postives = 123/146 (84.25%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 AFP TKK N D S++ASNGGRVQCMKVWPP K++ETLSYLP L++ L KE++ L+R+ W+PCLEFELE G+VYRE +SPG YDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCISFIA+KP G Sbjct: 28 AFPVTKKVN-DFSTLASNGGRVQCMKVWPPLGKKRYETLSYLPNLTEVQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASKPDG 172 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |