Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)
HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = -1
Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
AFP T+K +S++ SNGGRVQCMKVWP LKKFETLSYLP LS E+LLK+I LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI KP
Sbjct: 36 AFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)
HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = -1
Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
AFP T+K +S++ SNGGRVQCMKVWP LKKFETLSYLP LS E+LLK+I LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCTDA QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI +P
Sbjct: 36 AFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)
HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = -1
Query: 301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
AFP T+K+ +S++ SNGGRVQCMKVWP LKKFETLSYLP LS E+LLK+I LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCT A QV+KE E +KEYP +F+R+IGFDN RQVQC+SFI KP
Sbjct: 36 AFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)
HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P +++SN +S+ SNGGR++CM+VWP +KKFETLSYLPPLS EALLK+++ LIRS W+PCLEF + G+++RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct: 26 PVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)
HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 96/144 (66.67%), Postives = 118/144 (81.94%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P + +S + S SNGGR++CM+VWP +KKFETLSYLPPLS EALLK+++ LIRS W+PCLEF + G+V+RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct: 26 PISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)
HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 95/144 (65.97%), Postives = 119/144 (82.64%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P +++S + S+ SNGGR++CM+VWP +KKFETLSYLPPLS EAL K+++ LIRS W+PCLEF + G+V+RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct: 26 PVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)
HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P ++S N SNGGR++CM+VWP +KKFETLSYLPPL+ E LLK+I L+RS W+PCLEF + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct: 26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)
HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P ++S N SNGGR++CM+VWP +KKFETLSYLPPL+ E LLK+I L+RS W+PCLEF + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct: 26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)
HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = -1
Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
P +++S N SNGGR++CM+VWP +KKFETLSYLPPL+ E LLK+I L+RS W+PCLEF + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct: 26 PVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match:
RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)
HSP 1 Score: 200.29 bits (508), Expect = 9.007e-51
Identity = 98/146 (67.12%), Postives = 113/146 (77.40%), Query Frame = -1
Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
AFP T+K D S + SNG RV+CM+VWPP KKFETLSYLPPL+ E L +E++ LIR+GWIPC+EF + G+VYRE H SPG YDGRYWTMWKLPM+GCTD+ QVLKEV E K YP F RIIGFDN RQVQCISF+ KP G
Sbjct: 34 AFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (
BLAST: Citrus ESTs to SwissProt )
Total hits: 124
100 200 300 400 500 600 700 Expect = 6.03e-55 / Id = 69.44 Expect = 1.34e-54 / Id = 68.75 Expect = 2.29e-54 / Id = 68.75 Expect = 6.66e-54 / Id = 68.06 Expect = 9.62e-53 / Id = 66.67 Expect = 9.62e-53 / Id = 65.97 Expect = 2.14e-52 / Id = 67.36 Expect = 2.14e-52 / Id = 67.36 Expect = 2.80e-52 / Id = 67.36 Expect = 9.01e-51 / Id = 67.12 Sequence RBS3_FRIAG RBS1_FRIAG RBS5_FRIAG RBS_HORVU RBS2_WHEAT RBS1_WHEAT RBS1_ORYSJ RBS1_ORYSI RBS2_ORYSJ RBS_ZANAE
Match Name E-value Identity Description
RBS3_FRIAG 6.028e-55 69.44 Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FRIAG 1.343e-54 68.75 Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS5_FRIAG 2.290e-54 68.75 Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_HORVU 6.664e-54 68.06 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT 9.623e-53 66.67 Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT 9.623e-53 65.97 Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ 2.144e-52 67.36 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI 2.144e-52 67.36 Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ 2.800e-52 67.36 Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_ZANAE 9.007e-51 67.12 Ribulose bisphosphate carboxylase small chain, chl... [more]
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