CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_FRIAG (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Fritillaria agrestis GN=RBCS3 PE=2 SV=1)

HSP 1 Score: 214.157 bits (544), Expect = 6.028e-55
Identity = 100/144 (69.44%), Postives = 118/144 (81.94%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            AFP T+K    +S++ SNGGRVQCMKVWP   LKKFETLSYLP LS E+LLK+I  LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   36 AFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_FRIAG (Ribulose bisphosphate carboxylase small chain 1/4, chloroplastic OS=Fritillaria agrestis GN=RBCS1 PE=2 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.343e-54
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            AFP T+K    +S++ SNGGRVQCMKVWP   LKKFETLSYLP LS E+LLK+I  LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCTDA QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  +P
Sbjct:   36 AFPVTQKPATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTDAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVERP 178          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_FRIAG (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Fritillaria agrestis GN=RBCS5 PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.290e-54
Identity = 99/144 (68.75%), Postives = 118/144 (81.94%), Query Frame = -1
Query:  301 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 732
            AFP T+K+   +S++ SNGGRVQCMKVWP   LKKFETLSYLP LS E+LLK+I  LIR+GW+PCLEF LE G+V R+ +KSPG YDGRYWTMWKLPM+GCT A QV+KE  E +KEYP +F+R+IGFDN RQVQC+SFI  KP
Sbjct:   36 AFPVTQKTATGLSTLPSNGGRVQCMKVWPIVGLKKFETLSYLPTLSVESLLKQIEYLIRNGWVPCLEFSLE-GFVSRDNNKSPGYYDGRYWTMWKLPMFGCTGAAQVVKEAAECKKEYPAAFIRVIGFDNVRQVQCVSFIVEKP 178          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 6.664e-54
Identity = 98/144 (68.06%), Postives = 121/144 (84.03%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P +++SN   +S+ SNGGR++CM+VWP   +KKFETLSYLPPLS EALLK+++ LIRS W+PCLEF  + G+++RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG
Sbjct:   26 PVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 167          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 96/144 (66.67%), Postives = 118/144 (81.94%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P + +S +   S  SNGGR++CM+VWP   +KKFETLSYLPPLS EALLK+++ LIRS W+PCLEF  + G+V+RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   26 PISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIAFRPPG 168          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 206.838 bits (525), Expect = 9.623e-53
Identity = 95/144 (65.97%), Postives = 119/144 (82.64%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P +++S   + S+ SNGGR++CM+VWP   +KKFETLSYLPPLS EAL K+++ LIRS W+PCLEF  + G+V+RE + SPG YDGRYWTMWKLPM+GCTDA QVL EV EV+KEYP ++VR+IGFDN RQVQC+SFIA +PPG
Sbjct:   26 PVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIAFRPPG 167          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P  ++S N      SNGGR++CM+VWP   +KKFETLSYLPPL+ E LLK+I  L+RS W+PCLEF  + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 205.682 bits (522), Expect = 2.144e-52
Identity = 97/144 (67.36%), Postives = 114/144 (79.17%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P  ++S N      SNGGR++CM+VWP   +KKFETLSYLPPL+ E LLK+I  L+RS W+PCLEF  + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   26 PVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 2.800e-52
Identity = 97/144 (67.36%), Postives = 115/144 (79.86%), Query Frame = -1
Query:  295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726
            P +++S N      SNGGR++CM+VWP   +KKFETLSYLPPL+ E LLK+I  L+RS W+PCLEF  + G+VYRE H+SPG YDGRYWTMWKLPM+GCTDA QVLKE+ E +K YP +FVRIIGFDN RQVQ ISFIA KPPG
Sbjct:   26 PVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIAYKPPG 168          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 9.007e-51
Identity = 98/146 (67.12%), Postives = 113/146 (77.40%), Query Frame = -1
Query:  295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732
            AFP T+K   D S + SNG RV+CM+VWPP   KKFETLSYLPPL+ E L +E++ LIR+GWIPC+EF  + G+VYRE H SPG YDGRYWTMWKLPM+GCTD+ QVLKEV E  K YP  F RIIGFDN RQVQCISF+  KP G
Sbjct:   34 AFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFLTYKPEG 177          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS3_FRIAG6.028e-5569.44Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS1_FRIAG1.343e-5468.75Ribulose bisphosphate carboxylase small chain 1/4,... [more]
RBS5_FRIAG2.290e-5468.75Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS_HORVU6.664e-5468.06Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT9.623e-5366.67Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT9.623e-5365.97Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ2.144e-5267.36Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.144e-5267.36Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ2.800e-5267.36Ribulose bisphosphate carboxylase small chain A, c... [more]
RBS_ZANAE9.007e-5167.12Ribulose bisphosphate carboxylase small chain, chl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
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