CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_AEGTA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Aegilops tauschii GN=RBCS PE=2 SV=1) HSP 1 Score: 194.897 bits (494), Expect = 3.784e-49 Identity = 90/144 (62.50%), Postives = 112/144 (77.78%), Query Frame = -1 Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726 P +++SN SNGGR++CM+VWP +KKFETLSYLPPLS E LLK+++ LIRS W+PCLEF + G+++RE + SPG YDGRYWTMWKLPM+GC QV+ EV EV+KEYP + RIIGFDN RQVQ +SFIA+KPPG Sbjct: 26 PVSRRSNGASLGSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEGLLKQVDYLIRSKWVPCLEFR-KVGFIFREHNVSPGYYDGRYWTMWKLPMFGCPAPTQVIPEVEEVRKEYPDPYCRIIGFDNMRQVQSVSFIASKPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_PEA (Ribulose bisphosphate carboxylase small chain, chloroplastic (Fragment) OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 1.438e-48 Identity = 90/132 (68.18%), Postives = 105/132 (79.55%), Query Frame = -1 Query: 301 SSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 696 + I SNG RV+CM+VWPP KKFETLSYLPPL+ + LLKE+ L+R GW+PCLEFEL KG+VY E +KSP YDGRYWTMWKLPM+G TD QV+KEV EV YP +FVR+IGF+N RQVQCISFIA P Sbjct: 2 TDITSNGERVKCMQVWPPIGKKKFETLSYLPPLTRDQLLKEVEYLLRKGWVPCLEFELLKGFVYGEHNKSPRYYDGRYWTMWKLPMFGTTDPAQVVKEVDEVVAAYPEAFVRVIGFNNVRQVQCISFIAHTP 133
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_MAIZE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zea mays GN=RBCS PE=1 SV=1) HSP 1 Score: 190.274 bits (482), Expect = 9.321e-48 Identity = 88/146 (60.27%), Postives = 112/146 (76.71%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 + P ++S+ + ++ SNGGR++CM+VWP KKFETLSYLPPLS + LLK+++ L+R+GWIPCLEF + G+VYRE SP YDGRYWTMWKLPM+GC DA QV KE+ E K YP +F R+IGFDN +Q QC+SFIA KPPG Sbjct: 25 SLPVARRSSRSLGNV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLSTDDLLKQVDYLLRNGWIPCLEFS-KVGFVYRENSTSPCYYDGRYWTMWKLPMFGCNDATQVYKELQEAIKSYPDAFHRVIGFDNIKQTQCVSFIAYKPPG 168
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_PINTH (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1) HSP 1 Score: 184.496 bits (467), Expect = 5.114e-46 Identity = 87/147 (59.18%), Postives = 111/147 (75.51%), Query Frame = -1 Query: 301 FPATKKSNNDISS----IASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP++ K +N + SNGGRV+CM+VWPP KFETLSYLP L++E L+KE+ L+R+ W+PCLEF+LE G + R+ ++SPG YDGRYW MWKLPM+GCT+A QV+ EV E K YP +F+R+IGFDN RQVQCISFI KP Sbjct: 25 FPSSFKMSNAAAEWEQKTTSNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLE-GSISRKYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCISFIVHKP 170
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_LARLA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1) HSP 1 Score: 181.03 bits (458), Expect = 5.655e-45 Identity = 87/147 (59.18%), Postives = 107/147 (72.79%), Query Frame = -1 Query: 301 FPATKKSNNDISS----IASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 729 FP++K +N + SNG RV+CM+VWPP KKFETLSYLP L+ E L+KE+ L+++ W+PCLEFE E G + R SPG YDGRYW MWKLPM+GCT+A QVL EV E K YP++F+R+IGFDN RQVQCISFI KP Sbjct: 41 FPSSKTMSNAGAEWEQKTTSNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFE-EDGEIKRVYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCISFIVHKP 186
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_SPIOL (Ribulose bisphosphate carboxylase small chain OS=Spinacia oleracea GN=RBCS PE=1 SV=1) HSP 1 Score: 176.792 bits (447), Expect = 1.066e-43 Identity = 84/122 (68.85%), Postives = 98/122 (80.33%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 M+VWPP LKKFETLSYLPPL+ E LL E+N L+ GWIP LEFE++ G+VYRE KSPG YDGRYWTMWKLPM+G TD QV+ EV EV+K P +FVR IGF++KR+VQCISFIA KP G Sbjct: 1 MQVWPPLGLKKFETLSYLPPLTTEQLLAEVNYLLVKGWIPPLEFEVKDGFVYREHDKSPGYYDGRYWTMWKLPMFGGTDPAQVVNEVEEVKKAPPDAFVRFIGFNDKREVQCISFIAYKPAG 122
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SACHY (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Saccharum hybrid GN=RBCS PE=3 SV=1) HSP 1 Score: 171.785 bits (434), Expect = 3.431e-42 Identity = 83/146 (56.85%), Postives = 105/146 (71.92%), Query Frame = -1 Query: 295 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 732 + P ++S ++ + SNGGR++CM+VWP KKFETLSYLPPL+ E LLK+++ L+R+ W+PCLEF E G+VYRE SP YDGRYWTMWKLPM+GCTDA QV KE+ E YP I+GFDN RQ Q ++FIA KP G Sbjct: 24 SLPVARRSTTSLAKV-SNGGRIRCMQVWPAYGNKKFETLSYLPPLTQEQLLKQVDYLLRNNWVPCLEFSKE-GFVYRENSTSPCYYDGRYWTMWKLPMFGCTDASQVYKELQEAIASYP-ELRAILGFDNIRQTQWLTFIAYKPAG 166
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_WHEAT (Ribulose bisphosphate carboxylase small chain clone 512 (Fragment) OS=Triticum aestivum PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 6.470e-41 Identity = 76/107 (71.03%), Postives = 92/107 (85.98%), Query Frame = -1 Query: 295 SYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 615 +YLPPLS EALLK+++ LIRS W+PCLEF + G+++RE + SPG YDGRYWTMWKLPM+GCTDA QV+ EV EV+KEYP ++VRIIGFDN RQVQC+SFIA KPPG Sbjct: 1 AYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVINEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIAFKPPG 106
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_MARPA (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Marchantia paleacea GN=RBCS PE=2 SV=1) HSP 1 Score: 161.77 bits (408), Expect = 3.550e-39 Identity = 76/129 (58.91%), Postives = 96/129 (74.42%), Query Frame = -1 Query: 301 SNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEY-PHSFVRIIGFDNKRQVQCISFIAAKP 684 +NG RV CM+VW P KFETLSYLPPLS +AL K+I+ +I+SGW PC+EF+++ G V RE PG YDGRYWTMWKLPM+GCTD+ VL+E+ E +K Y ++R +GFDN RQVQC SFI +P Sbjct: 51 TNGSRVSCMQVWEPYNNLKFETLSYLPPLSQDALAKQIDYVIKSGWAPCIEFDVQ-GTVTREGSTMPGYYDGRYWTMWKLPMFGCTDSASVLREIEECKKLYGKKCYIRCLGFDNTRQVQCASFIVHQP 178
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_EUGGR (Ribulose bisphosphate carboxylase small chains, chloroplastic OS=Euglena gracilis GN=RBCS1 PE=2 SV=1) HSP 1 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 135 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 262 HSP 2 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 279 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 406 HSP 3 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 566 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 693 HSP 4 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 709 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 836 HSP 5 Score: 135.191 bits (339), Expect = 3.558e-31 Identity = 65/128 (50.78%), Postives = 84/128 (65.62%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 997 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 1124 HSP 6 Score: 133.265 bits (334), Expect = 1.352e-30 Identity = 64/128 (50.00%), Postives = 83/128 (64.84%), Query Frame = -1 Query: 295 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD YWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P G Sbjct: 422 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNHYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRPSG 549 HSP 7 Score: 133.265 bits (334), Expect = 1.352e-30 Identity = 64/126 (50.79%), Postives = 83/126 (65.87%), Query Frame = -1 Query: 301 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 660 MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR+ FD+ +QVQ ISF+ +P Sbjct: 1141 MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVRLAAFDSVKQVQVISFVVQRP 1266 HSP 8 Score: 131.339 bits (329), Expect = 5.138e-30 Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = -1 Query: 295 PATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWV-----YREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPPG 726 P+ S++ A G + MKVW P KKFET SYLPPLSD + K+++ +I G PCLEF E ++ R + G YD RYWTMWKLPM+GCTDA QVL+E+ E ++ YP +VR + FD+ +QVQ ISF+ +P G Sbjct: 834 PSGSSSSSSWGMAAMTGEKE--MKVWNPVNNKKFETFSYLPPLSDAQIAKQVDMIIAKGLSPCLEFAAPENSFIANDNTVRFSGTAAGYYDNRYWTMWKLPMFGCTDASQVLREISECRRAYPQCYVR-LAFDSVKQVQVISFVVQRPSG 980 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |