CF834610
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29 Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = -1 Query: 298 ELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 528 ELE G+VYRE +PG YDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP Sbjct: 1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1) HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29 Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = -1 Query: 301 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEF-ELEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 660 M VW P K FET SYLPPLSDE + +++ ++ +GWIPCLEF E +K +V E G YD RYWTMWKLPM+GC D QVL+E+ K +P ++VR++ FDN++QVQ + F+ +P Sbjct: 46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29 Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = -1 Query: 301 KVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFE------LEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 657 KVW P K++ET SYLPPL+++ + ++++ +I +GW PCLEF + R S G YD RYWTMWKLPM+GCTD QVL+EV Q +P+ ++R++ FDN +QVQC+ F+ +P Sbjct: 30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29 Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = -1 Query: 301 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEF-ELEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 660 M VW P K FET SYLPPL+DE + +++ ++ +GWIPCLEF E +K +V E G YD RYWTMWKLPM+GC D QVL+E+ K +P ++VR++ FDN++QVQ + F+ +P Sbjct: 46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27 Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = -1 Query: 298 FPATKKSNNDISSIASNGGRVQC--MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 729 FP K+N ASN +C M VW P K FET SYLPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 7.678e-26 Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWVYREPHKSPG*Y-----DGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET SYLPPL+DE + K+++ ++ + W PCLEF ++ + E + G D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25 Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET SYLPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25 Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET SYLPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25 Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = -1 Query: 298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732 A P S +S +N R M VW P K FET S+LPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTD QVL E+ +P +++R++ FD RQVQ F+ +PP Sbjct: 21 ATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25 Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = -1 Query: 298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660 M VW P K FET S+LPPL+DE + K+++ ++ + W PCLEF + + P S D RYWTMWKLPM+GCTDA QVL E+ K +P +++R++ FD RQVQ F+ +PP Sbjct: 43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169 The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 124
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Sequences
The
following sequences are available for this feature:
EST sequence >CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bpback to top |