CF834610

Overview
NameCF834610
Unique NameCF834610
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_SINAL (Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 58/77 (75.32%), Postives = 67/77 (87.01%), Query Frame = -1
Query:  298 ELEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 528
            ELE G+VYRE   +PG YDGRYWTMWKLP++GCTD+ QVLKEV E +KEYP++F+RIIGFDN RQVQCISFIA KPP
Sbjct:    1 ELEHGFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNRQVQCISFIAYKPP 77          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS2_CHLRE (Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-2 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.145e-29
Identity = 61/126 (48.41%), Postives = 83/126 (65.87%), Query Frame = -1
Query:  301 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEF-ELEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 660
            M VW P   K FET SYLPPLSDE +  +++ ++ +GWIPCLEF E +K +V  E     G      YD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLSDEQIAAQVDYIVANGWIPCLEFAESDKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS_CHLMO (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Chlamydomonas moewusii GN=RBCS PE=2 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.495e-29
Identity = 57/125 (45.60%), Postives = 82/125 (65.60%), Query Frame = -1
Query:  301 KVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFE------LEKGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 657
            KVW P   K++ET SYLPPL+++ + ++++ +I +GW PCLEF       +      R    S G YD RYWTMWKLPM+GCTD  QVL+EV   Q  +P+ ++R++ FDN +QVQC+ F+  +P
Sbjct:   30 KVWQPVNNKQYETFSYLPPLTNQKIGRQVDYIINNGWTPCLEFADPSTSFVSNANAVRLQGVSAGYYDNRYWTMWKLPMFGCTDPSQVLREVSACQVAFPNVYIRLVAFDNVKQVQCMGFLVQRP 154          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS1_CHLRE (Ribulose bisphosphate carboxylase small chain 1, chloroplastic OS=Chlamydomonas reinhardtii GN=RBCS-1 PE=1 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.953e-29
Identity = 60/126 (47.62%), Postives = 83/126 (65.87%), Query Frame = -1
Query:  301 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEF-ELEKGWVYREPHKSPG*-----YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKP 660
            M VW P   K FET SYLPPL+DE +  +++ ++ +GWIPCLEF E +K +V  E     G      YD RYWTMWKLPM+GC D  QVL+E+    K +P ++VR++ FDN++QVQ + F+  +P
Sbjct:   46 MMVWTPVNNKMFETFSYLPPLTDEQIAAQVDYIVANGWIPCLEFAEADKAYVSNESAIRFGSVSCLYYDNRYWTMWKLPMFGCRDPMQVLREIVACTKAFPDAYVRLVAFDNQKQVQIMGFLVQRP 171          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_ACECL (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia cliftonii GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.399e-27
Identity = 64/153 (41.83%), Postives = 86/153 (56.21%), Query Frame = -1
Query:  298 FPATKKSNNDISSIASNGGRVQC--MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 729
            FP   K+N      ASN    +C  M VW P   K FET SYLPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   22 FPRATKNNK---GFASNAAVQKCRDMMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVSSTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 170          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS6_ACECL (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Acetabularia cliftonii GN=RBCS-6 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.678e-26
Identity = 56/127 (44.09%), Postives = 78/127 (61.42%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFEL-EKGWVYREPHKSPG*Y-----DGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET SYLPPL+DE + K+++ ++ + W PCLEF   ++ +   E   + G       D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANAWTPCLEFAASDQAYAGNENCITMGPVASTYQDNRYWTMWKLPMFGCTDGSQVLTEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS5_ACECL (Ribulose bisphosphate carboxylase small chain 5, chloroplastic OS=Acetabularia cliftonii GN=RBCS-5 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET SYLPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   45 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 171          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_ACECL (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia cliftonii GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.003e-25
Identity = 56/128 (43.75%), Postives = 76/128 (59.38%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET SYLPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSYLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS4_ACEAT (Ribulose bisphosphate carboxylase small chain 4, chloroplastic OS=Acetabularia acetabulum GN=RBCS-4 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.310e-25
Identity = 60/152 (39.47%), Postives = 83/152 (54.61%), Query Frame = -1
Query:  298 AFPATKKSNNDISSIASNGGRVQCMKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 732
            A P    S    +S  +N  R   M VW P   K FET S+LPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTD  QVL E+      +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   21 ATPKVVTSKRSFASTVANKNRE--MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILANSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDGSQVLSEIQACTNAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
BLAST of CF834610 vs. ExPASy Swiss-Prot
Match: RBS3_ACEAT (Ribulose bisphosphate carboxylase small chain 3, chloroplastic OS=Acetabularia acetabulum GN=RBCS-3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.710e-25
Identity = 56/128 (43.75%), Postives = 77/128 (60.16%), Query Frame = -1
Query:  298 MKVWPPTVLKKFETLSYLPPLSDEALLKEINSLIRSGWIPCLEFELE-------KGWVYREPHKSPG*YDGRYWTMWKLPMYGCTDAPQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCISFIAAKPP 660
            M VW P   K FET S+LPPL+DE + K+++ ++ + W PCLEF          +  +   P  S    D RYWTMWKLPM+GCTDA QVL E+    K +P +++R++ FD  RQVQ   F+  +PP
Sbjct:   43 MMVWQPFNNKMFETFSFLPPLTDEQISKQVDYILINSWTPCLEFAASDQAYAGNENCIRMGPVASTY-QDNRYWTMWKLPMFGCTDASQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPP 169          
The following BLAST results are available for this feature:
BLAST of CF834610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 124
Match NameE-valueIdentityDescription
RBS_SINAL1.145e-2975.32Ribulose bisphosphate carboxylase small chain (Fra... [more]
RBS2_CHLRE1.145e-2948.41Ribulose bisphosphate carboxylase small chain 2, c... [more]
RBS_CHLMO1.495e-2945.60Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_CHLRE1.953e-2947.62Ribulose bisphosphate carboxylase small chain 1, c... [more]
RBS3_ACECL1.399e-2741.83Ribulose bisphosphate carboxylase small chain 3, c... [more]
RBS6_ACECL7.678e-2644.09Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS5_ACECL1.003e-2543.75Ribulose bisphosphate carboxylase small chain 5, c... [more]
RBS4_ACECL1.003e-2543.75Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS4_ACEAT1.310e-2539.47Ribulose bisphosphate carboxylase small chain 4, c... [more]
RBS3_ACEAT1.710e-2543.75Ribulose bisphosphate carboxylase small chain 3, c... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N04_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834610 ID=CF834610; Name=CF834610; organism=Citrus sinensis; type=EST; length=732bp
TTTTTTTACTCTTTTAATTCCAGTAATTCTCACTCTTTAAACTGAACATC
CGAGACCCAGATTAGTGAAACTGACAACAAAGGATTCGATTATTAAAATA
TATATAAAAAAAAAAAAAAGAAGCCAATGTCGGGGAGAAAACCAAAAAAG
TTTGAGCAGCAGCAACAGCAGCCTAAGTACAAATTAAACGCAAACCGAAC
CCCCATTGATCGAATGATCATTATGGGGGTTACACATAATAATAATCAAC
AATATTGCATGGGTGGTTACACAAATTTAATTGGGAACCTAGACGCCTGG
TGGCTTGGCAGCAATGAAACTGATGCACTGCACTTGACGCTTGTTGTCAA
ATCCGATAATTCGGACGAATGAATGGGGGTATTCCTTCTGGACCTCCCCA
ACCTCCTTCAAAACCTGGGGTGCATCTGTGCACCCATACATGGGCAGCTT
CCACATTGTCCAGTACCGTCCATCGTATTATCCTGGGGACTTGTGGGGCT
CACGGTACACCCATCCTTTCTCCAACTCGAATTCCAAGCAGGGAATCCAG
CCGGAGCGGATAAGGGAATTGATTTCCTTGAGCAAAGCTTCATCGGACAG
TGGCGGGAGGTATGAGAGAGTCTCGAACTTCTTCAAGACAGTTGGTGGCC
ACACCTTCATGCATTGGACTCTTCCGCCGTTGCTTGCAATGGAAGAAATG
TCATTGTTGGACTTCTTGGTTGCTGGGAAAGC
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