CF834625

Overview
NameCF834625
Unique NameCF834625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834625_ssr54 microsatellite CF834625_ssr54:54..69. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10947 contig Csv1_Contig10947:155..805. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK3_SOLLC (S-adenosylmethionine synthetase 3 OS=Solanum lycopersicum GN=SAM3 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.707e-69
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNYRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_SOLTU (S-adenosylmethionine synthetase 2 OS=Solanum tuberosum GN=METK2 PE=2 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 2.707e-69
Identity = 130/158 (82.28%), Postives = 137/158 (86.71%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK LK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILVLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVLK 387          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_TOBAC (S-adenosylmethionine synthetase 1 OS=Nicotiana tabacum GN=SAMS1 PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 6.030e-69
Identity = 129/158 (81.65%), Postives = 137/158 (86.71%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDF+WE VK LK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFSWETVKVLK 387          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK1_PETHY (S-adenosylmethionine synthetase 1 OS=Petunia hybrida GN=SAM1 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 7.876e-69
Identity = 129/157 (82.17%), Postives = 136/157 (86.62%), Query Frame = -1
Query:  184 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPL 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK3_CATRO (S-adenosylmethionine synthetase 3 OS=Catharanthus roseus GN=SAMS3 PE=1 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 1.755e-68
Identity = 128/158 (81.01%), Postives = 137/158 (86.71%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRC+VQVSYAIGV EPLSVFVD++ TGKIPDK+IL ++KENFDFRPGMI+INLDLKRGGN R+ KTAA GH GRDDPDFTWE VK LK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCLVQVSYAIGVAEPLSVFVDTFKTGKIPDKDILALIKENFDFRPGMIAINLDLKRGGNFRYQKTAALGHLGRDDPDFTWETVKILK 387          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_PETHY (S-adenosylmethionine synthetase 2 OS=Petunia hybrida GN=SAM2 PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 6.667e-68
Identity = 127/157 (80.89%), Postives = 135/157 (85.99%), Query Frame = -1
Query:  184 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPL 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VASGLARRCIVQVSYAIGV EPLSVFVD+Y TG IP K++L ++KENFDFRPGM+SINLDL RGGN R+ KTAAYGHFGRDDPDFTWE VK L
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPGKDVLTLIKENFDFRPGMMSINLDLLRGGNFRYQKTAAYGHFGRDDPDFTWETVKVL 386          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_TOBAC (S-adenosylmethionine synthetase 2 OS=Nicotiana tabacum GN=SAMS2 PE=2 SV=1)

HSP 1 Score: 256.529 bits (654), Expect = 8.708e-68
Identity = 127/158 (80.38%), Postives = 136/158 (86.08%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKS+VA+GLARRCIVQVSYAIGV EPLSVFVD+Y TG IPDK+IL ++KENFDFRPGMI+INLDL RGGN R+ KTAAYGHFGRD+ DFTWE VK LK
Sbjct:  230 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGEGAFSGKDPTKVDRSGAYIVRQAAKSVVAAGLARRCIVQVSYAIGVAEPLSVFVDTYKTGTIPDKDILALIKENFDFRPGMIAINLDLLRGGNFRYQKTAAYGHFGRDEADFTWETVKALK 387          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK2_PETCR (S-adenosylmethionine synthetase 2 (Fragment) OS=Petroselinum crispum GN=SMS-2 PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.485e-67
Identity = 127/144 (88.19%), Postives = 131/144 (90.97%), Query Frame = -1
Query:  172 AGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLKWEK 603
            AGLTGRKIIIDTY            GKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPD+EIL+IVKE FDFRPGMISINLDLKRGGNGRFLKTAAYGHFGR+DPDFTWE+VKPLKWEK
Sbjct:    1 AGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDREILQIVKETFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGREDPDFTWEVVKPLKWEK 144          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK_CHLRE (S-adenosylmethionine synthetase OS=Chlamydomonas reinhardtii GN=METM PE=3 SV=1)

HSP 1 Score: 251.136 bits (640), Expect = 3.658e-66
Identity = 121/158 (76.58%), Postives = 135/158 (85.44%), Query Frame = -1
Query:  181 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDDPDFTWEIVKPLK 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VASGLA+RC+VQVSY+I V EPLSVFVD+YGTG +PD EILK+++++FDFRPG+I  NLDLKRGGN R+ KTAAYGHFGRDDPDFTWE VK L+
Sbjct:  233 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSVVASGLAKRCLVQVSYSIAVAEPLSVFVDTYGTGTMPDAEILKLIRKHFDFRPGLIGKNLDLKRGGNKRYQKTAAYGHFGRDDPDFTWETVKKLE 390          
BLAST of CF834625 vs. ExPASy Swiss-Prot
Match: METK_OSTLU (S-adenosylmethionine synthetase OS=Ostreococcus lucimarinus (strain CCE9901) GN=METK-1 PE=3 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.944e-59
Identity = 118/159 (74.21%), Postives = 126/159 (79.25%), Query Frame = -1
Query:  184 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYXXXXXXXXXXXXGKDPTKVDRSGAYIVRQAAKSIVASGLARRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMISINLDLKRGGNGRFLKTAAYGHFGRDD--PDFTWEIVKPL 654
            FHLNPSGRFVIGGPHGDAGLTGRKIIIDTY            GKDPTKVDRSGAYI RQAAKS+VA+GLARRC+ Q+SYAIGV EPLSV VD+YGTGKIPD EIL  VK  FDFRPGM+   LDLKRGGN R+  TAAYGHFGRD+    FTWE V PL
Sbjct:  229 FHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYISRQAAKSVVAAGLARRCLFQISYAIGVAEPLSVHVDTYGTGKIPDSEILAKVKAAFDFRPGMMGKALDLKRGGNKRYQTTAAYGHFGRDEDLDIFTWEKVVPL 387          
The following BLAST results are available for this feature:
BLAST of CF834625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
METK3_SOLLC2.707e-6982.28S-adenosylmethionine synthetase 3 OS=Solanum lycop... [more]
METK2_SOLTU2.707e-6982.28S-adenosylmethionine synthetase 2 OS=Solanum tuber... [more]
METK1_TOBAC6.030e-6981.65S-adenosylmethionine synthetase 1 OS=Nicotiana tab... [more]
METK1_PETHY7.876e-6982.17S-adenosylmethionine synthetase 1 OS=Petunia hybri... [more]
METK3_CATRO1.755e-6881.01S-adenosylmethionine synthetase 3 OS=Catharanthus ... [more]
METK2_PETHY6.667e-6880.89S-adenosylmethionine synthetase 2 OS=Petunia hybri... [more]
METK2_TOBAC8.708e-6880.38S-adenosylmethionine synthetase 2 OS=Nicotiana tab... [more]
METK2_PETCR1.485e-6788.19S-adenosylmethionine synthetase 2 (Fragment) OS=Pe... [more]
METK_CHLRE3.658e-6676.58S-adenosylmethionine synthetase OS=Chlamydomonas r... [more]
METK_OSTLU1.944e-5974.21S-adenosylmethionine synthetase OS=Ostreococcus lu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N14_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834625 ID=CF834625; Name=CF834625; organism=Citrus sinensis; type=EST; length=654bp
CCTTGGATTGAGAATCCATTAAACATATTTATTAAAAAAAAAAAGGAAAA
GAAAAAGAAAGAAAGAAAGAAAACATTCATGTAACTGAAACAGAAGTAAA
AAAGAAAAGTAGACATATATAAGCACCAATGAGAGGCCAGCAGCTCATCC
TTGATTAGTTTAAGCTTGAAGTTTCTCCCACTTGAGTGGCTTAACAATCT
CCCAAGTGAAATCAGGATCATCTCTGCCAAAGTGCCCATAAGCGGCAGTC
TTCAAGAACCTGCCGTTGCCACCCCTCTTGAGATCAAGATTAATAGAAAT
CATCCCAGGCCTAAAATCAAAATTCTCCTTCACAATCTTCAAAATTTCCT
TGTCAGGGATCTTCCCAGTCCCATAACTATCAACAAAAACTGACAAAGGC
TCGGGCACACCAATAGCGTAAGAAACCTGAACAATGCATCTCCTGGCAAG
CCCGCTTGCCACAATACTCTTAGCAGCTTGCCTTACAATGTAAGCACCGC
TTCTATCAACCTTGGTAGGATCTTTCCCTGAGAAAGCCCCACCACCGTGT
GCCCCCCAGCCACCATAAGTATCAATAATAATCTTCCGGCCGGTGAGCCC
AGCATCACCGTGAGGGCCACCAATCACAAAACGGCCAGATGGGTTAAGAT
GGAA
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