CF834632

Overview
NameCF834632
Unique NameCF834632
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF834632 vs. ExPASy Swiss-Prot
Match: VDAC_CAEEL (Probable voltage-dependent anion-selective channel OS=Caenorhabditis elegans GN=R05G6.7 PE=2 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.993e-11
Identity = 64/233 (27.47%), Postives = 100/233 (42.92%), Query Frame = 2 
Query:   14 ISSGTKKGELFLADVNTQLKNKNITTDLKVDTASNLFTTITVDEP-APGLKTIL-SFKVPD--QRSGKVELQYLHDYAGISTSVGLTANPIVNFSAVIGTNVLSLGTDLSFDSKSGNFTKCNAGLSFNDADLIASLNLNNKGDSLAASYYHFVNPLTAVGAEVIHSFSTTDNTITVGTQHILDPLTTLKARVNNAGIASALIQHEWRPKSLFTISGEVDTKAIEKSAKFGLAL 700
            I SG   G L   DV  ++    IT   K +T + L T I V+E    GLK  L S   P   +RSGKV+L +    A ++  VG+T+ P++N + V   +   +G   +FDS S      +     +         + N  D   AS YH V     VG ++            + T++      T++A+VN++   +    H   P    T+S + +  A   + KFGL L
Sbjct:   50 IGSGKLGGNL---DVKYKIPQYGITLTEKWNTENQLGTVIEVNEQFGRGLKVTLDSLYAPHAGKRSGKVKLDWALPTARVTADVGVTSAPVINAAGVFSRDGWLIGAAATFDSSSNKLAATSLAFGHSTPQYTLHSFVINSTD-FGASLYHKVASNVEVGTQLGWKVGGNGADYALATKYAPSRDLTVRAKVNSSSQVAVAATHSLSPALKLTLSTQFNL-AANDAHKFGLGL 277
The following BLAST results are available for this feature:
BLAST of CF834632 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
VDAC_CAEEL4.993e-1127.47Probable voltage-dependent anion-selective channel... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834632 ID=CF834632; Name=CF834632; organism=Citrus sinensis; type=EST; length=703bp
TGGAGTTGCTACTATATCATCTGGAACGAAAAAGGGTGAGCTGTTTCTAG
CTGATGTTAATACCCAGCTGAAGAACAAGAATATCACAACTGATCTCAAA
GTGGACACTGCCTCCAATCTTTTCACAACTATCACTGTTGATGAACCTGC
TCCTGGGCTGAAAACGATCCTAAGCTTCAAAGTTCCAGATCAAAGGTCTG
GCAAGGTTGAACTCCAGTATTTGCATGATTATGCGGGGATAAGCACAAGT
GTCGGCTTAACAGCGAATCCTATTGTTAACTTCTCGGCTGTGATTGGTAC
TAATGTTCTCTCTCTTGGTACTGATCTGTCATTTGACTCCAAATCTGGGA
ACTTCACTAAATGCAATGCTGGTCTGAGCTTCAACGATGCCGACCTTATT
GCTTCATTGAATTTGAACAACAAAGGTGATTCCCTGGCTGCATCCTACTA
CCACTTTGTTAATCCCTTGACAGCTGTTGGTGCAGAAGTAATCCATAGCT
TCTCAACCACTGACAATACCATCACTGTTGGGACCCAGCACATATTAGAT
CCACTGACCACATTGAAGGCGCGAGTGAACAATGCTGGCATTGCTAGTGC
TCTCATCCAGCATGAGTGGCGTCCAAAGTCGTTGTTCACCATTTCTGGTG
AGGTGGACACCAAGGCCATTGAGAAGAGTGCCAAATTTGGACTGGCATTG
GCT
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