CF834633

Overview
NameCF834633
Unique NameCF834633
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length536
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9274 contig Csv1_Contig9274:1181..1715. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 112.464 bits (280), Expect = 1.339e-24
Identity = 56/87 (64.37%), Postives = 67/87 (77.01%), Query Frame = -1
Query:  276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536
            ARVYDDEVR              LVNSKE  PTFEQP++T+EKLLEYG+M+V EQENVKRVQLADKYL+EAALGE N DA+++G+ +
Sbjct:  346 ARVYDDEVRRWVSETGVENIARKLVNSKEGPPTFEQPKITIEKLLEYGHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.894e-24
Identity = 55/84 (65.48%), Postives = 64/84 (76.19%), Query Frame = -1
Query:  285 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSG 536
            ARVYDDEVR              L+NS++  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ NADAI +G
Sbjct:  349 ARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPKMTLEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.894e-24
Identity = 56/85 (65.88%), Postives = 64/85 (75.29%), Query Frame = -1
Query:  282 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGN 536
            ARVYDDEVR              L+NS +  PTFEQP+MT+EKLLEYGNM+VQEQENVKRVQLA+ YL EAALG+ NADAI +GN
Sbjct:  354 ARVYDDEVRKWVSGTGIEAIGDKLLNSFDGPPTFEQPKMTVEKLLEYGNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGN 438          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.297e-23
Identity = 54/87 (62.07%), Postives = 65/87 (74.71%), Query Frame = -1
Query:  276 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQLADKYLSEAALGEGNADAIQSGNLY 536
            ARVYDDEVR              LVNSKE  PTF+QP+MT++KLL Y +M+VQEQENVKRVQLAD+YL+EAALG  N DAI+SG+ +
Sbjct:  354 ARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPKMTLDKLLLYASMLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440          
BLAST of CF834633 vs. ExPASy Swiss-Prot
Match: RCA_CUCSA (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.937e-15
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = -1
Query:  348 ARVYDDEVRNRXXXXXXXXXXXSLVNSKEAAPTFEQPRMTMEKLLEYGNMIVQEQENVKRVQL 536
            ARVYDDEVR             +LVNSKE+ PTF+QP+MT+EKLLEYGNM+V EQENVKRV+L
Sbjct:  347 ARVYDDEVRKWAVGVGVERIGRNLVNSKESPPTFDQPKMTIEKLLEYGNMLVMEQENVKRVKL 409          
The following BLAST results are available for this feature:
BLAST of CF834633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RCA_MAIZE1.339e-2464.37Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN3.894e-2465.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC3.894e-2465.88Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU3.297e-2362.07Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CUCSA1.937e-1565.08Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05N19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05N19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834633 ID=CF834633; Name=CF834633; organism=Citrus sinensis; type=EST; length=536bp
TTTTTTTTTTTTTTTAGAGATCGAATAAAGAGTTGTGATATACACACCTT
ATTAAAGGATTCTTTCTAATTAACAAAGAAATGAAAATGCAACAATATTA
TTTGAATATCTCGCATCCTAAGCAAAGTGCGACACTTCTCAACCCTTACA
AACAAGGCCTAAAGCGTGTATTGGCAGCTTCCATCATCACTTCTTGCGGA
TGGATCAAAGTTTTCTGCAGTAGGATCAGTACATCCTTCAGGAACTGGAA
CATTCATTTGCTGGGCTGCTTTGCCATACAAATTTCCACTCTGAATAGCA
TCTGCATTACCTTCGCCAAGAGCGGCCTCACTCAAATACTTGTCAGCCAA
CTGAACTCTCTTCACATTCTCTTGCTCTTGCACAATCATGTTTCCGTACT
CGAGCAGCTTCTCCATTGTCATCCTTGGTTGCTCGAATGTTGGGGCTGCT
TCCTTTGAGTTCACAAGGCTCTTGCCAATGCTTCCAACACCAATACCAGA
GATCCTATTCCTCACCTCATCATCATAGACTCTGGC
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