CF834646

Overview
NameCF834646
Unique NameCF834646
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length537
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10203 contig Csv1_Contig10203:336..872. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_SHIFL (Serine acetyltransferase OS=Shigella flexneri GN=cysE PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 3 
Query:  186 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++
Sbjct:   98 YSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEV 214
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_ECOLI (Serine acetyltransferase OS=Escherichia coli (strain K12) GN=cysE PE=1 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 3 
Query:  186 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++
Sbjct:   98 YSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEV 214
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_ECOL6 (Serine acetyltransferase OS=Escherichia coli O6 GN=cysE PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 3 
Query:  186 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++
Sbjct:   98 YSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEV 214
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_ECO57 (Serine acetyltransferase OS=Escherichia coli O157:H7 GN=cysE PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 7.311e-39
Identity = 77/117 (65.81%), Postives = 95/117 (81.20%), Query Frame = 3 
Query:  186 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +S  LL  KGF A QA+R+ H LW Q RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI N+VSIL  VTLGGTGK+ GDRHPKI +GV+IGAGA ILGN+++
Sbjct:   98 YSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEV 214
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_HAEIN (Serine acetyltransferase OS=Haemophilus influenzae GN=cysE PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 2.127e-38
Identity = 76/113 (67.26%), Postives = 94/113 (83.19%), Query Frame = 3 
Query:  198 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            LL  KGF A Q++R+ H LW Q+R+ LAL LQ++IS  F VDIHPAAKIG GI+FDHATG+V+GET+VI N+VSIL  VTLGGTGK SGDRHPK+ +GV+IGAGA ILGN+++
Sbjct:   98 LLYLKGFHAIQSYRITHYLWNQNRKSLALYLQNQISVAFDVDIHPAAKIGHGIMFDHATGIVVGETSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEV 210
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_SALTY (Serine acetyltransferase OS=Salmonella typhimurium GN=cysE PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.189e-38
Identity = 76/117 (64.96%), Postives = 95/117 (81.20%), Query Frame = 3 
Query:  186 FSHCLLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +S  LL  KGF A QA+R+ H LW + RR LA+ LQ+++S  F VDIHPAAKIG+GI+ DHATG+V+GETAVI ++VSIL  VTLGGTGK SGDRHPKI +GV+IGAGA ILGN+++
Sbjct:   98 YSTPLLYLKGFHALQAYRIGHWLWNKGRRALAIFLQNQVSVSFQVDIHPAAKIGRGIMLDHATGIVVGETAVIEDDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEV 214
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAI (Serine acetyltransferase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=cysE PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.278e-32
Identity = 70/114 (61.40%), Postives = 87/114 (76.32%), Query Frame = 3 
Query:  198 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGK-ASGDRHPKIGDGVLIGAGATILGNVKI 536
            LL  KGF A +A+R++H LW   ++ L+L LQSRIS  F+VDIHPAA IG G++ DHATG+VIGE   I N+VSILH VTLGGTGK  S +RHP I  GV+IGAGA ILGN+++
Sbjct:  102 LLYLKGFHALEAYRISHYLWNTGKKSLSLYLQSRISSEFSVDIHPAAFIGSGVMLDHATGIVIGEGVTIENDVSILHSVTLGGTGKNFSQNRHPTIRKGVVIGAGAKILGNIEV 215
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_BUCAP (Serine acetyltransferase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=cysE PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 5.611e-31
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 3 
Query:  198 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFAVDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASG-DRHPKIGDGVLIGAGATILGNVKI 536
            LL  KGF A +A+R++H LW   R  L+  LQSRIS VF+VDIHPAA IG GI+ DHATG+VIGE  +I N+VSI H VTLGGTG  +G +RHP I   V IGAGA ILGN+++
Sbjct:  102 LLYLKGFHALEAYRLSHYLWNIKRYELSAYLQSRISTVFSVDIHPAASIGSGIMLDHATGIVIGEGVIIENDVSIFHSVTLGGTGSNTGKNRHPIIRKNVTIGAGAKILGNIEV 215
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_STAAW (Serine acetyltransferase OS=Staphylococcus aureus (strain MW2) GN=cysE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 3 
Query:  198 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFA-VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +  Y G  A  +H +AHKL+ Q +   A A+ S+IS  F  ++IHP AKIGK +  DH  GVVIGET  IG+NV+I   VTLGGTGK  G RHP IGD VLI AGA +LGN+KI
Sbjct:   26 ITTYAGLHAVWSHLIAHKLYNQKKYVAARAI-SQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKI 138
[Close]
BLAST of CF834646 vs. ExPASy Swiss-Prot
Match: CYSE_STAAS (Serine acetyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=cysE PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 8.384e-27
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 3 
Query:  198 LLNYKGFLACQAHRVAHKLWTQSRRPLALALQSRISDVFA-VDIHPAAKIGKGILFDHATGVVIGETAVIGNNVSILHHVTLGGTGKASGDRHPKIGDGVLIGAGATILGNVKI 536
            +  Y G  A  +H +AHKL+ Q +   A A+ S+IS  F  ++IHP AKIGK +  DH  GVVIGET  IG+NV+I   VTLGGTGK  G RHP IGD VLI AGA +LGN+KI
Sbjct:   28 ITTYAGLHAVWSHLIAHKLYNQKKYVAARAI-SQISRFFTGIEIHPGAKIGKRLFIDHGMGVVIGETCTIGDNVTIYQGVTLGGTGKERGKRHPDIGDNVLIAAGAKVLGNIKI 140
The following BLAST results are available for this feature:
BLAST of CF834646 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CYSE_SHIFL7.311e-3965.81Serine acetyltransferase OS=Shigella flexneri GN=c... [more]
CYSE_ECOLI7.311e-3965.81Serine acetyltransferase OS=Escherichia coli (stra... [more]
CYSE_ECOL67.311e-3965.81Serine acetyltransferase OS=Escherichia coli O6 GN... [more]
CYSE_ECO577.311e-3965.81Serine acetyltransferase OS=Escherichia coli O157:... [more]
CYSE_HAEIN2.127e-3867.26Serine acetyltransferase OS=Haemophilus influenzae... [more]
CYSE_SALTY6.189e-3864.96Serine acetyltransferase OS=Salmonella typhimurium... [more]
CYSE_BUCAI2.278e-3261.40Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_BUCAP5.611e-3160.53Serine acetyltransferase OS=Buchnera aphidicola su... [more]
CYSE_STAAW8.384e-2755.26Serine acetyltransferase OS=Staphylococcus aureus ... [more]
CYSE_STAAS8.384e-2755.26Serine acetyltransferase OS=Staphylococcus aureus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05O03_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834646 ID=CF834646; Name=CF834646; organism=Citrus sinensis; type=EST; length=537bp
CCGTTAACTCTTCCTTGGAGAGATCGCTGGCGTTTCATTTCCGAAACAAG
CTCTGCTCCTCCACGCTTCTCTCCACTCTCTTGTACGATCTCTTTCTGGA
CACTTTCTCCTCCGACCCCGCTCTCCGCGCCGCGGCCGTCGCCGATCTTC
GCGCCGCCCGTGTCCGTGACCCTGCTTGCGTTTCCTTCTCTCACTGCCTC
CTCAATTACAAAGGCTTCTTGGCTTGCCAGGCTCACCGAGTAGCACACAA
GCTCTGGACTCAGTCACGTAGGCCGCTGGCACTAGCATTACAATCCCGTA
TCTCTGATGTGTTTGCTGTTGATATACACCCAGCTGCAAAAATAGGGAAA
GGGATTTTGTTTGATCATGCAACAGGTGTGGTAATAGGTGAGACCGCAGT
TATTGGCAACAATGTGTCAATCTTGCATCATGTTACACTTGGCGGTACGG
GGAAGGCAAGCGGGGATCGGCACCCGAAGATTGGAGATGGGGTGTTGATC
GGGGCTGGAGCAACCATATTAGGGAACGTGAAGATTG
back to top