CF834650

Overview
NameCF834650
Unique NameCF834650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIC_SECCE (Basic endochitinase C OS=Secale cereale GN=rscc PE=1 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47
Identity = 89/156 (57.05%), Postives = 109/156 (69.87%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            IIS   F+ +LL+ ND  C A+GFYTYDAF+ AA AFPGFG +G+   RKR +AAF AQT HETTGGW  AP G +AWGYC+ ++   A+            PG +YYGRGPIQL+ N NY   G  +GVDLL NPDL+ATDP +SFK+A+WFWMT
Sbjct:   28 IISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWFWMT 183          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.345e-47
Identity = 90/157 (57.32%), Postives = 111/157 (70.70%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +IS  MF+ +L + ND  C  +  FY+Y+AFI AA++F GFG +G+ T RKR IAAFFAQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG  +GVDLLNNPDL+ATDPV+SFKSAIWFWMT
Sbjct:   81 VISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMT 237          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 5.224e-47
Identity = 94/186 (50.54%), Postives = 117/186 (62.90%), Query Frame = 1
Query:   37 GGSAQNCGTGVVCXXXXXXXXXXXXXXXKIISREMFEDLLLYINDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            G + + CG G  C                +IS  MF+ +L + ND  C  +  FY+Y+AF+ AA +FPGFG +G+ T RKR IAAF AQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG  +GVDLLNNPDL+ATDPV+SFKSAIWFWMT
Sbjct:   47 GNTNEYCGPGN-CQSQCPGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDPVISFKSAIWFWMT 231          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 187.193 bits (474), Expect = 5.224e-47
Identity = 88/156 (56.41%), Postives = 109/156 (69.87%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            I+SR +F+ +LL+ ND  C A+GFYTYDAF+ AA AF GFG +G    RKR +AAF AQT HETTGGW  AP G +AWGYC+ ++    S+           PG+ YYGRGPIQL+ N NY   G  +GVDLL NPDL+ATDP +SFK+A+WFWMT
Sbjct:   80 IVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTAMWFWMT 235          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 184.496 bits (467), Expect = 3.386e-46
Identity = 89/157 (56.69%), Postives = 109/157 (69.43%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARG-FYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +IS  MF+ +L + ND  C  +  FY+Y+AFI AA +FPGFG +G+ T RKR IAAF AQT HETTGGW  AP G YAWGYC++R+                 PG +Y+GRGPIQ++ N NY  CG  +GVDLLNNPDL+ATD V+SFKSAIWFWMT
Sbjct:   71 VISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNYGPCGRAIGVDLLNNPDLVATDSVISFKSAIWFWMT 227          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI2_HORVU (26 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 4.423e-46
Identity = 87/156 (55.77%), Postives = 108/156 (69.23%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            I+SR  F+ +LL+ ND  C A+GFYTYDAF+ AA AFPGFG +G+   +KR +AAF AQT HETTGGW  AP G +AWGYC+ ++   +S            PG +YYGRGPIQL+ N NY   G  +GVDLL NPDL+ATD  + FK+AIWFWMT
Sbjct:   28 IVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLSHNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWFWMT 183          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.169e-44
Identity = 80/156 (51.28%), Postives = 105/156 (67.31%), Query Frame = 1
Query:  121 KIISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +++   +F+ +L Y ND RC   GFYTYDAFI AA++F GFG +G++  +K+ +AAF AQT HETTGGW  AP G YAWGYC++ +                   +YYGRGPIQLT N NY   G+ +  DL+NNPDLL+T+P +SFK+AIWFWMT
Sbjct:   82 RLVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNYGLAGQAIKEDLINNPDLLSTNPTVSFKTAIWFWMT 237          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.204e-43
Identity = 81/156 (51.92%), Postives = 106/156 (67.95%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPG-QYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +IS+ +FE +L++ ND  C A+GFYTY+AFI A + F  FG +G+   R + IAAF AQT HETTGGW  AP G Y+WGYCY R+                 PG +Y+GRGPIQ+++N NY   G  +GV+LLNNPDL+A D V+SFK+A+WFWMT
Sbjct:    8 LISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNYGAAGSAIGVNLLNNPDLVANDAVVSFKTALWFWMT 163          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.573e-43
Identity = 80/158 (50.63%), Postives = 107/158 (67.72%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQ---VIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            I+SR +F+ +LL+ NDA CPA+ FYTYDAF+ AA AFP F  +G+   RKR +AAF AQT HETTGGW  AP G Y+WGYC+  +    + +               +YYGRGPIQ+++N NY   G+ +G +LL+NPDL+A+D  +SFK+A WFWMT
Sbjct:   82 IVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNYGPAGQAIGSNLLSNPDLVASDATVSFKTAFWFWMT 239          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.504e-43
Identity = 82/155 (52.90%), Postives = 105/155 (67.74%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            II+R MFE +L +  D  C    FYTYDAFI+AA  FP FG +GN+  R+R +AAFF QT HETTGGW  AP G +AWGYC + ++ P+                YYGRGPIQLT   NY   G+ LG+DL+NNPDL+++DPV++F++AIWFWMT
Sbjct:   30 IITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDP-------------PYYGRGPIQLTHKYNYQLAGDALGLDLVNNPDLVSSDPVVAFRTAIWFWMT 170          
The following BLAST results are available for this feature:
BLAST of CF834650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHIC_SECCE2.345e-4757.05Basic endochitinase C OS=Secale cereale GN=rscc PE... [more]
CHI4_SOLTU2.345e-4757.32Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHIC_SOLLC5.224e-4750.54Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI1_HORVU5.224e-4756.4126 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI3_SOLTU3.386e-4656.69Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_HORVU4.423e-4655.7726 kDa endochitinase 2 OS=Hordeum vulgare PE=1 SV=... [more]
CHIX_PEA3.169e-4451.28Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHID_SOLLC1.204e-4351.92Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI1_ORYSJ1.573e-4350.63Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI11_ORYSJ3.504e-4352.90Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834650 ID=CF834650; Name=CF834650; organism=Citrus sinensis; type=EST; length=589bp
TTACTAATTTTCTCTCTACCCTTATCTTTTGTACTAGGAGGTTCAGCACA
GAATTGTGGAACCGGCGTTGTGTGCGGTGAACGTGATACTGGCCTCGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCTGTATATAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGATAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTATCCCTGCGTCGTCCGACT
ACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGA
GGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAAC
CTTGGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAG
TACTATCCTTCAAGTCAGCAATCTGGTTCTGGATGACTG
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