CF834650

Overview
NameCF834650
Unique NameCF834650
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length589
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9802 contig Csv1_Contig9802:91..679. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 3.753e-37
Identity = 73/154 (47.40%), Postives = 98/154 (63.64%), Query Frame = 1
Query:  130 SREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLP--GQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWM 585
            +  MFE +L   N+  CP +GFYTYDA+  A + +PGFG +G++  RKR +AAFFAQT  ET+G         + WGYC + ++ P +SD          P    YYGRGP+QL WN NY  CG  LG +LL+ P+ +ATDPVLSF++A+WFWM
Sbjct:   68 TESMFEQMLPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNP-NSDYCDPKTKSSYPCVADYYGRGPLQLRWNYNYGECGNYLGQNLLDEPEKVATDPVLSFEAALWFWM 220          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +++ + FE +L + +DA CPARGFY Y AF+ AA AFP F  +G+   RKR +AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GE +G DLL NP+L+ATDP ++FK+A+W WMT
Sbjct:  100 VVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMT 248          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 4.149e-36
Identity = 75/157 (47.77%), Postives = 103/157 (65.61%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSD-XXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +++ + FE +L + +DA CPARGFY Y AF+ AA AFP F  +G+   RKR +AAF AQT H T+       GG Y+WGYCY ++V  A+SD           PG+ Y+ RGP+Q+ +N NY   GE +G DLL NP+L+ATDP ++FK+A+W WMT
Sbjct:  100 VVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATS-------GGPYSWGYCY-KEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNYGAAGEAIGADLLGNPELVATDPTVAFKTALWLWMT 248          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIB_POPTR (Acidic endochitinase WIN6.2B OS=Populus trichocarpa PE=2 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 2.277e-34
Identity = 71/155 (45.81%), Postives = 90/155 (58.06%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            II   MF+D+L Y ND +CPA GFYTY+AFI AA+ FP FGN+G++ MRKR IAAF  QT HET G W  A G +Y WGYC++                                 N NY  CG+ L + LL  P+L+ TDP ++FK+A+WFWMT
Sbjct:   88 IIPESMFDDMLKYRNDPQCPAVGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETNGWWPAAQGDQYDWGYCHM---------------------------------NYNYGLCGDDLNLPLLQEPELVETDPFIAFKTALWFWMT 209          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIT_AVESA (Endochitinase (Fragments) OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.973e-34
Identity = 74/155 (47.74%), Postives = 97/155 (62.58%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +IS  +FE +LL+        RGFYTYDAFI AA++FP F  +G+  +RKR +AAF AQT HETTGGW  AP G Y  G         ++SD             Y+GRGPIQ+++N NY   G+ +GVDLL NPDL+ +D  + FK+A+WFWMT
Sbjct:    4 VISSSLFEKMLLH--------RGFYTYDAFIAAAKSFPAFATTGSTDVRKREVAAFLAQTSHETTGGWPTAPDGPYELG---------STSD-------------YFGRGPIQISYNYNYGAAGKAIGVDLLRNPDLVTSDNTVEFKTALWFWMT 128          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.688e-29
Identity = 62/156 (39.74%), Postives = 93/156 (59.62%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYG-RGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            +++  +F+ +  +  D  CP++GFY+Y +F+ AA++FP FG  G+   RKR +AAF A     T+G  +D     +AWG C+I       +D           G+ Y  RGPIQLT N NY   G+ +G DL+ NPDL+  DP++SFK+A+WFWM+
Sbjct:  133 VVTEPLFDQMFSHRKD--CPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSGERSDVEN-PHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNYGLAGQAIGEDLIQNPDLVEKDPIISFKTALWFWMS 285          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIT_DIOJA (Acidic endochitinase OS=Dioscorea japonica PE=1 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 1.479e-25
Identity = 64/183 (34.97%), Postives = 89/183 (48.63%), Query Frame = 1
Query:   37 GGSAQNCGTGVVCXXXXXXXXXXXXXXXKIISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWM 585
            G S   CG G                    I  + F D +     A CP + FYT   F+EA  A+PGFG    +  RKR IAA+FA   HET           +A  YC   Q  P + +            +Y+GRGP+QL+WN NY+  G+ L  D LN+PD++  DP++SFK+++WFW+
Sbjct:   19 GNSYDYCGPGCQAGPCWDPCEGDGTLTVSDIVTQEFWDGIASQAAANCPGKSFYTRSNFLEAVSAYPGFGTKCTDEDRKREIAAYFAHVTHETGHLCYIEERDGHANNYCQESQQYPCNPNK-----------EYFGRGPMQLSWNYNYIDAGKELHFDGLNDPDIVGRDPIISFKTSLWFWI 190          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI6_ORYSJ (Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht6 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 5.621e-25
Identity = 61/156 (39.10%), Postives = 86/156 (55.13%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASS---DXXXXXXXXXLPGQYYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFW 582
            I++ E F  L+   +D  C A+GFYT DAF+ AA  +P FG +G+    KR IAAFFA   HET               +CYI ++   S    D             YYGRGP+Q++WN NY   G+++G D L +PD +A  PVL+F++A+W+W
Sbjct:   71 IVTPEFFAALVAQADDG-CAAKGFYTRDAFLTAAGGYPSFGRTGSVDDSKREIAAFFAHANHETIK-------------FCYIEEIDGPSKNYCDETSTQWPCMAGKGYYGRGPLQISWNFNYGPAGQSIGFDGLGDPDAVARSPVLAFQTALWYW 212          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHIP_BETVU (Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.028e-23
Identity = 64/157 (40.76%), Postives = 83/157 (52.87%), Query Frame = 1
Query:  124 IISREMFEDLLLYINDARCPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTG-GWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXXLPGQ-YYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWMT 588
            I+S+  F+ ++     A CP + FYT  AF+ A    P FGN G+    KR IAAFFA   HETT     +   G+    YC          D           G+ YYGRGP+QL+WN NY   G+ +G D L NP+ +ATD   SFK+A+WFWMT
Sbjct:   90 IVSQAFFDGIIGQAA-ASCPGKNFYTRAAFLSAVD--PKFGNEGSSDDNKREIAAFFAHISHETTNLCHIEERDGDVGDAYC----------DQDKAAQYPCAAGKKYYGRGPLQLSWNYNYALAGQAIGFDGLGNPEKVATDVNTSFKAAMWFWMT 233          
BLAST of CF834650 vs. ExPASy Swiss-Prot
Match: CHI4_ORYSJ (Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht4 PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 56/139 (40.29%), Postives = 76/139 (54.68%), Query Frame = 1
Query:  178 CPARGFYTYDAFIEAAQAFPGFGNSGNETMRKR*IAAFFAQTGHETTGGWTDAPGGEYAWGYCYIRQVIPASSDXXXXXXXXX--LPGQ-YYGRGPIQLTWNCNYLRCGETLGVDLLNNPDLLATDPVLSFKSAIWFWM 585
            C  + FYT  +F+ AA+++ GF N       KR IAAFFA   HET                CYI ++  A+ D            PG+ YYGRGP+Q++WN NY   G+ +G D L +PD +A DP +SFK+A+WFWM
Sbjct:  104 CAGKSFYTRQSFLNAARSYSGFANDRTNDDSKREIAAFFAHVTHETGH-------------MCYINEINGANMDYCDKSNKQWPCQPGKKYYGRGPLQISWNFNYGPAGKNIGFDGLRDPDKVAQDPTISFKTALWFWM 229          
The following BLAST results are available for this feature:
BLAST of CF834650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
CHI8_POPTR3.753e-3747.40Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ4.149e-3647.77Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI4.149e-3647.77Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIB_POPTR2.277e-3445.81Acidic endochitinase WIN6.2B OS=Populus trichocarp... [more]
CHIT_AVESA2.973e-3447.74Endochitinase (Fragments) OS=Avena sativa PE=1 SV=... [more]
AGI_URTDI1.688e-2939.74Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIT_DIOJA1.479e-2534.97Acidic endochitinase OS=Dioscorea japonica PE=1 SV... [more]
CHI6_ORYSJ5.621e-2539.10Chitinase 6 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIP_BETVU4.028e-2340.76Acidic endochitinase SP2 OS=Beta vulgaris GN=SP2 P... [more]
CHI4_ORYSJ1.531e-2240.29Chitinase 4 OS=Oryza sativa subsp. japonica GN=Cht... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834650 ID=CF834650; Name=CF834650; organism=Citrus sinensis; type=EST; length=589bp
TTACTAATTTTCTCTCTACCCTTATCTTTTGTACTAGGAGGTTCAGCACA
GAATTGTGGAACCGGCGTTGTGTGCGGTGAACGTGATACTGGCCTCGGGA
CGGATGGCGGTGAACTGGGCAAGATCATCTCAAGGGAGATGTTTGAAGAC
TTGCTTCTGTATATAAATGATGCCCGATGCCCTGCCAGAGGCTTCTACAC
TTATGATGCTTTTATAGAGGCAGCCCAAGCTTTTCCAGGCTTTGGTAACT
CTGGAAATGAAACCATGCGTAAAAGATAAATTGCTGCCTTTTTTGCCCAA
ACTGGCCATGAAACTACTGGGGGATGGACCGATGCACCTGGTGGAGAATA
TGCTTGGGGATATTGCTATATTAGGCAAGTTATCCCTGCGTCGTCCGACT
ACTGTTATCCTTACTGTCCATGTCCCTTGCCAGGGCAATACTATGGCCGA
GGTCCAATTCAACTCACTTGGAATTGCAATTACTTAAGGTGCGGAGAAAC
CTTGGGGGTGGACTTGTTGAACAATCCAGACCTACTTGCCACTGATCCAG
TACTATCCTTCAAGTCAGCAATCTGGTTCTGGATGACTG
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