CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_ANTMA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Antirrhinum majus GN=GAPC PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.499e-22
Identity = 52/84 (61.90%), Postives = 62/84 (73.81%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K A+ E +KAAIK  SEG +KGILGYT++ VV  DFVGDS SSIFDA+ GI  + +F KLVSW+  EWGY  RV D+I HMA V
Sbjct:  253 KKATYEQIKAAIKEESEGKLKGILGYTEDDVVSTDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIVHMASV 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.241e-21
Identity = 52/85 (61.18%), Postives = 62/85 (72.94%), Query Frame = -1
Query:   41 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVG 295
            K AS + +K AIK ASEG MKGILGYT++ VV  DF+ DS SSIFDA+ GI  S +F KLV+W+  EWGY NRV D+I HMA  G
Sbjct:  255 KPASYDAIKTAIKEASEGQMKGILGYTEDDVVSTDFITDSRSSIFDAKAGIALSDTFVKLVAWYDNEWGYSNRVVDLIVHMAKQG 339          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSJ (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. japonica GN=GAPC PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.620e-21
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS + +K+AIK ASEG +KGI+GY +E +V  DFVGDS SSIFDA+ GI  + +F KLV+W+  EWGY NRV D+I HMA
Sbjct:  253 KAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_ORYSI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Oryza sativa subsp. indica GN=GAPC PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.620e-21
Identity = 49/82 (59.76%), Postives = 62/82 (75.61%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS + +K+AIK ASEG +KGI+GY +E +V  DFVGDS SSIFDA+ GI  + +F KLV+W+  EWGY NRV D+I HMA
Sbjct:  253 KAASYDAIKSAIKSASEGKLKGIIGYVEEDLVSTDFVGDSRSSIFDAKAGIALNDNFVKLVAWYDNEWGYSNRVIDLIRHMA 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.116e-21
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAAIK  SEG MKGILGYT++ VV  DFVGD+ SSIFDA+ GI  + +F KLVSW+  EWGY +RV D+I HM+
Sbjct:  253 KEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDLIRHMS 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.715e-21
Identity = 50/82 (60.98%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   53 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 298
            AK A+ E +KAAIK  SEG++KGILGY DE +V  DF GDS SSIFDA+ GI  + +F KLVSW+  EWGY  RV D+I HM
Sbjct:  220 AKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDLIRHM 301          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_TAXBA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Taxus baccata PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.050e-20
Identity = 48/81 (59.26%), Postives = 61/81 (75.31%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            K A+  ++KAAIK  SEG +KGILGYT++ VV  DF+GDS SSIFDA+ GI  + +F KLVSW+  EWGY +RV D+I HM
Sbjct:  256 KSATYGEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSSRVIDLIVHM 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_ARATH (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Arabidopsis thaliana GN=GAPC PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.050e-20
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ +++K AIK  SEG +KGILGYT++ VV  DFVGD+ SSIFDA+ GI  S  F KLVSW+  EWGY +RV D+I HM+
Sbjct:  255 KAATYDEIKKAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALSDKFVKLVSWYDNEWGYSSRVVDLIVHMS 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_SCHPO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schizosaccharomyces pombe GN=gpd3 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.050e-20
Identity = 49/83 (59.04%), Postives = 60/83 (72.29%), Query Frame = -1
Query:   50 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 298
            AK  + ED+KAAIK ASEG MKG+LGYT++ VV  DF GD+ SSIFDA  GI  S  F KLVSW+  EWGY +RV D++ + A
Sbjct:  250 AKPTNYEDIKAAIKAASEGPMKGVLGYTEDSVVSTDFCGDNHSSIFDASAGIQLSPQFVKLVSWYDNEWGYSHRVVDLVAYTA 332          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_MESCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Mesembryanthemum crystallinum GN=GAPC PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.792e-20
Identity = 47/82 (57.32%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS E +KAAIK  SEG +KGILGYT++ +V  DF+GD+ SSIFDA+ GI  + +F KLVSW+  EWGY  RV D+I H++
Sbjct:  253 KAASYEQIKAAIKEESEGKLKGILGYTEDDLVSTDFIGDNRSSIFDAKAGISLNDNFVKLVSWYDNEWGYSTRVVDLIMHIS 334          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3PC_ANTMA9.499e-2261.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PHYPA1.241e-2161.18Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSJ1.620e-2159.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ORYSI1.620e-2159.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_ATRNU2.116e-2160.98Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3PC_HORVU4.715e-2160.98Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_TAXBA1.050e-2059.26Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_ARATH1.050e-2058.54Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_SCHPO1.050e-2059.04Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Schi... [more]
G3PC_MESCR1.792e-2057.32Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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