CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ESCVU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia vulneris GN=gap PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.520e-11
Identity = 34/61 (55.74%), Postives = 46/61 (75.41%), Query Frame = -1
Query:  113 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLV 295
            K AS E++K AIK ASEG+MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLV
Sbjct:  234 KAASYEEIKKAIKAASEGAMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_ESCBL (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Escherichia blattae GN=gap PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.985e-11
Identity = 33/62 (53.23%), Postives = 48/62 (77.42%), Query Frame = -1
Query:  113 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLV 298
            AK A+ E++K A+K ASEG+MKG+LGYT++ VV  DF G++ +S+FDA+ GI  + +F KLV
Sbjct:  233 AKPATYEEIKKAMKAASEGAMKGVLGYTEDDVVSTDFNGETCTSVFDAKAGIALNDNFVKLV 294          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 1.985e-11
Identity = 34/80 (42.50%), Postives = 51/80 (63.75%), Query Frame = -1
Query:   41 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVG 280
            EDV  A+K A+EG +KGILGY++E +V  D+ G+  SS  DA   +    +  K++SW+  E GY NRV D+ +++A  G
Sbjct:  255 EDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIAAKG 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  113 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLV 295
            K AS E++K AIK ASEG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLV
Sbjct:  234 KAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.593e-11
Identity = 34/61 (55.74%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  113 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLV 295
            K AS E++K AIK ASEG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLV
Sbjct:  234 KAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_AMAMU (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Amanita muscaria GN=GPD PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.423e-11
Identity = 31/62 (50.00%), Postives = 47/62 (75.81%), Query Frame = -1
Query:  110 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVS 295
            + A+ +++K A + AS+GS+KGI+ YTDEHVV  DF+G + SSIFD+  GI  +A+F KL++
Sbjct:  228 QSATYDEIKEAFREASKGSLKGIIEYTDEHVVSTDFIGHTASSIFDSLAGIQLNANFVKLIA 289          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.544e-11
Identity = 31/85 (36.47%), Postives = 56/85 (65.88%), Query Frame = -1
Query:   41 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVG 295
            K A+ +++ A IK  SE  +KGI+ YT+E VV +DF+  + +  FD++ GI  ++ F KLV+W+  E+GY N++ ++ +++   G
Sbjct:  251 KDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDFLSTTSTCNFDSKAGIMLNSRFVKLVAWYDNEFGYANKLVELAKYVGSKG 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap2 PE=3 SV=2)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = -1
Query:   50 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 280
            E+V  A+K ASEG +KGIL Y++  +V +D+ G   SSI DA + +       K+++W+  EWGY  RV D+ E +A
Sbjct:  257 EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDASLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVA 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anabaena sp. (strain PCC 7120) GN=gap2 PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 32/77 (41.56%), Postives = 48/77 (62.34%), Query Frame = -1
Query:   50 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 280
            E+V  A+K ASEG +KGIL Y++  +V +D+ G   SSI DA + +       K+++W+  EWGY  RV D+ E +A
Sbjct:  257 EEVNQALKDASEGPLKGILDYSELQLVSSDYQGTDASSIVDANLTLVMGNDLVKVMAWYDNEWGYSQRVLDLAELVA 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.853e-11
Identity = 32/61 (52.46%), Postives = 45/61 (73.77%), Query Frame = -1
Query:  113 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLV 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLV
Sbjct:  234 KPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLV 294          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3P1_ESCVU1.520e-1155.74Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_ESCBL1.985e-1153.23Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_BACME1.985e-1142.50Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P_ENTAE2.593e-1155.74Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CITFR2.593e-1155.74Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_AMAMU4.423e-1150.00Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_GIALA7.544e-1136.47Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
G3P2_ANAVT9.853e-1141.56Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P2_ANASP9.853e-1141.56Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Anab... [more]
G3P1_ESCFE9.853e-1152.46Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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