CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.763e-19
Identity = 44/82 (53.66%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS E +KAA+K ASEG +KGILGYT++ +V +D  G++ SSIFDA+ GI  + +F KLVSW+  EWGY  RV D++ ++A
Sbjct:  250 KPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.763e-19
Identity = 43/81 (53.09%), Postives = 61/81 (75.31%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGAS +++KA ++ A+ G +KGILGYTDE VV  DF+ D+ SS+FDA+ GI  +  F KL+SW+  E+GY NRV D+I++M
Sbjct:  248 KGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_DROME (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila melanogaster GN=Gapdh2 PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 5.763e-19
Identity = 43/81 (53.09%), Postives = 61/81 (75.31%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGAS +++KA ++ A+ G +KGILGYTDE VV  DF+ D+ SS+FDA+ GI  +  F KL+SW+  E+GY NRV D+I++M
Sbjct:  248 KGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 42/77 (54.55%), Postives = 59/77 (76.62%), Query Frame = -1
Query:   50 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 280
            E++K+ IK ASEG +KG+LGYT++ VV +DF+GD  SSIFDA  GI  + SF KL+SW+  E+GY  RV D+++H+A
Sbjct:  255 EEIKSVIKAASEGKLKGVLGYTEDAVVSSDFLGDERSSIFDASAGIQLTPSFVKLISWYDNEYGYSTRVVDLLQHVA 331          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K  S +D+KAA+K ASEG ++G+LGYT++ VV  DF GD+ SSIFDA+ GI  S +F K+VSW+  E+GY  RV D+I+HM  V
Sbjct:  247 KECSYDDIKAAMKAASEGPLQGVLGYTEDDVVSCDFTGDNRSSIFDAKAGIQLSKTFVKVVSWYDNEFGYSQRVIDLIKHMQKV 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 43/84 (51.19%), Postives = 61/84 (72.62%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            KGAS +++K A+K ASEG + GILGYT++ +V  D  GD+ SSIFDA+ GI  + +F KLVSW+  EWGY  RV D++ ++A +
Sbjct:  250 KGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIAKI 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_COLLN (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum lindemuthianum GN=GPDA PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGA+ +++K AIK A+EG +KG+L YT++  V  D +G+  SSIFDA+ GI  + +F KLVSW+  EWGY  RV D++ H+A V A
Sbjct:  250 KGATYDEIKQAIKEAAEGPLKGVLAYTEDDFVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Saccharomyces cerevisiae GN=TDH2 PE=1 SV=3)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -1
Query:   50 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 280
            +++K  +K A+EG +KG+LGYT++ VV +DF+GDS SSIFDA  GI  S  F KLVSW+  E+GY  RV D++EH+A
Sbjct:  254 DEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSNSSIFDAAAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_DROME (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Drosophila melanogaster GN=Gapdh1 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.527e-19
Identity = 43/81 (53.09%), Postives = 61/81 (75.31%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGA+ +++KA ++ AS+G +KGILGYTDE VV  DF  D+ SS+FDA+ GI  +  F KL+SW+  E+GY NRV D+I++M
Sbjct:  248 KGATYDEIKAKVEEASKGPLKGILGYTDEEVVSTDFFSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_TRIAT (Glyceraldehyde-3-phosphate dehydrogenase OS=Trichoderma atroviride GN=gpd1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 43/86 (50.00%), Postives = 61/86 (70.93%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            K AS E++ +AIK A++G +KGI+ YT + VV  D +G++ SSIFD + GI  + +F KLVSW+  EWGY  RV D++EH+A V A
Sbjct:  250 KAASYEEITSAIKKAADGELKGIMAYTSDEVVSTDMLGNNNSSIFDIKAGISLNPNFVKLVSWYDNEWGYSRRVLDLLEHVAKVDA 335          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3P_PODAN5.763e-1953.66Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P2_DROPS5.763e-1953.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P2_DROME5.763e-1953.09Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_PICPA7.527e-1954.55Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PANVR7.527e-1954.76Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]
G3P_CURLU7.527e-1951.19Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_COLLN7.527e-1950.00Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_YEAST7.527e-1954.55Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Sacc... [more]
G3P1_DROME7.527e-1953.09Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Dros... [more]
G3P_TRIAT9.830e-1950.00Glyceraldehyde-3-phosphate dehydrogenase OS=Tricho... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
back to top