CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K A+ +++KAAIK  SEG +KGI G+T++ VV  DF+GD+ SSIFDA+ GI  S +F KLVSW+  E GY  RV D+I+H+A V
Sbjct:  253 KEATYDEIKAAIKEESEGKLKGIPGHTEDDVVSTDFIGDNRSSIFDAKAGIALSKNFVKLVSWYDNEMGYSTRVVDLIKHIASV 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P3_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Saccharomyces cerevisiae GN=TDH3 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 42/77 (54.55%), Postives = 58/77 (75.32%), Query Frame = -1
Query:   50 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 280
            +++K  +K A+EG +KG+LGYT++ VV +DF+GDS SSIFDA  GI  S  F KLVSW+  E+GY  RV D++EH+A
Sbjct:  254 DEIKKVVKAAAEGKLKGVLGYTEDAVVSSDFLGDSHSSIFDASAGIQLSPKFVKLVSWYDNEYGYSTRVVDLVEHVA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhizomucor racemosus GN=GPD1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = -1
Query:   44 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 298
            +KGAS +++K AIK ASE +MKG+LGYT + VV +DFVG+  SS+FDA  GI  + +F KL++W+  E+GY NRV D++ H A V
Sbjct:  249 SKGASYDEIKQAIKKASETTMKGVLGYTSDAVVSSDFVGEVCSSVFDAAAGIQLTPTFVKLIAWYDNEYGYSNRVVDLLVHAAKV 333          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   53 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 298
            AK  S +++ AA+K ASEGS+ GILGYTDE VV  DF GD+ SSIFDA  GI  +++F K+V+W+  EWGY NRV D++  M
Sbjct:  253 AKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.830e-19
Identity = 46/82 (56.10%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   53 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 298
            AK  S +++ AA+K ASEGS+ GILGYTDE VV  DF GD+ SSIFDA  GI  +++F K+V+W+  EWGY NRV D++  M
Sbjct:  253 AKATSYKEICAAMKQASEGSLAGILGYTDEEVVSTDFQGDTHSSIFDAGAGIELNSNFFKVVAWYDNEWGYSNRVVDLMLSM 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_YARLI (Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrowia lipolytica GN=GPD PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.284e-18
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 GAS*EDVKAAIKYASEG-SMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 292
            GAS ED+KA +K ASE   +KGILGYTDE VV  DF+GD+ SSIFDA+ GIG + +F KL+SW+  E+GY  RV D+I  +A
Sbjct:  251 GASYEDIKATMKAASESPELKGILGYTDEDVVSTDFIGDTHSSIFDAKAGIGLNDNFVKLISWYDNEYGYSARVVDLIVAVA 332          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CRYNE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryptococcus neoformans GN=GPD PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 48/87 (55.17%), Postives = 63/87 (72.41%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEG-SMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGAS E++K  IK ASE   +KGILGYT++ VV  DF+G + SSIFDA+ GI  +A+F KLVSW+  E+GY  RV D+I ++A V A
Sbjct:  250 KGASYEEIKNVIKKASESPELKGILGYTEDAVVSTDFIGSTESSIFDAQAGIALNANFVKLVSWYDNEYGYSRRVCDLISYIAGVDA 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces lactis GN=GAP1 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.190e-18
Identity = 41/83 (49.40%), Postives = 63/83 (75.90%), Query Frame = -1
Query:   50 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 298
            AK A+ +++KAA+K AS+G +K ++GYT++ VV +DF+GD+ S+IFDA  GI  S  F K+V+W+  E+GY  RV D++EH+A
Sbjct:  247 AKEATYDEIKAAVKKASQGKLKNVVGYTEDSVVSSDFLGDTHSTIFDASAGIQLSPKFVKVVAWYDNEYGYSERVVDLVEHVA 329          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_SORMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Sordaria macrospora GN=GPD PE=3 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGAS +++K  +K ASEG + GIL YT++ VV +D  G+  SSIFDA+ GI  + +F KLVSW+  EWGY  RV D+I ++A V A
Sbjct:  250 KGASYDEIKEVVKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYVAKVDA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.860e-18
Identity = 43/84 (51.19%), Postives = 58/84 (69.05%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            KGA+ E +K A+K A++G +KG+L YT++ VV  D  G+  SSIFDA+ GI  +  F KLVSW+  EWGY  RV D+I H+A V
Sbjct:  250 KGATYEQIKTAVKKAADGPLKGVLAYTEDDVVSTDMNGNPNSSIFDAKAGISLNDHFVKLVSWYDNEWGYSRRVLDLISHVAKV 333          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3PC_PETHY9.830e-1954.76Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_YEAST9.830e-1954.55Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Sacc... [more]
G3P1_RHIRA9.830e-1952.94Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Rhiz... [more]
G3P1_ANAVT9.830e-1956.10Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP9.830e-1956.10Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_YARLI1.284e-1858.54Glyceraldehyde-3-phosphate dehydrogenase OS=Yarrow... [more]
G3P_CRYNE2.190e-1855.17Glyceraldehyde-3-phosphate dehydrogenase OS=Crypto... [more]
G3P1_KLULA2.190e-1849.40Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_SORMA2.860e-1851.16Glyceraldehyde-3-phosphate dehydrogenase OS=Sordar... [more]
G3P_CRYPA2.860e-1851.19Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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