CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.879e-18
Identity = 43/82 (52.44%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ + +K A+K A+EG MKG+LGYT++ VV +DF+GD+ +SIFDA  GI  S  F KL+SW+  E+GY  RV D+IE++A
Sbjct:  249 KEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDFLGDTHASIFDASAGIQLSPKFVKLISWYDNEYGYSARVVDLIEYVA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_KLUMA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluyveromyces marxianus GN=GAP1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.879e-18
Identity = 41/82 (50.00%), Postives = 61/82 (74.39%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ +++KAA+K  SEG +K ++GYT++ VV +DF+GD+ S+IFDA  GI  S  F KLV+W+  E+GY  RV D++EH+A
Sbjct:  248 KAATYDEIKAAVKKVSEGKLKDVVGYTEDAVVSSDFLGDTHSTIFDAAAGIQLSPKFVKLVAWYDNEYGYSTRVVDLVEHVA 329          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_SCHCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Schizophyllum commune GN=GPD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS +++ A +K ASEG +KGILG+TDE VV  DF G + SSIFD++ GI  S SF KL++W+  EWGY  RV D++ + A
Sbjct:  250 KEASYDEIVATVKEASEGPLKGILGFTDESVVSTDFTGANESSIFDSKAGIAISKSFVKLIAWYDNEWGYSRRVCDLLVYAA 331          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PICAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia angusta GN=GPD PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 44/81 (54.32%), Postives = 60/81 (74.07%), Query Frame = -1
Query:   38 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 280
            ED+ A +K A+EG + GILGYTDE VV +DF+ DS SS+FDA+ GI  + +F KLVSW+  E+GY  RV D+++H+A V A
Sbjct:  255 EDICATMKKAAEGPLAGILGYTDEAVVSSDFLTDSRSSVFDAKAGILLTPTFVKLVSWYDNEYGYSTRVVDLLQHVAKVSA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 41/81 (50.62%), Postives = 60/81 (74.07%), Query Frame = -1
Query:   53 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHM 295
            KGAS +++KA ++ A+ G +KGILGYTDE VV  DF+ D+ SS+F+ + GI  +  F KL+SW+  E+GY NRV D+I++M
Sbjct:  248 KGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFEPKAGISLNDKFVKLISWYDNEFGYSNRVIDLIKYM 328          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_COTJA (Glyceraldehyde-3-phosphate dehydrogenase OS=Coturnix coturnix japonica GN=GAPDH PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 45/82 (54.88%), Postives = 58/82 (70.73%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A  +D+K  +K A+EG +KGILGYT++ VV  DF GDS SS FDA  GI  + +F KLVSW+  E+GY NRV D++ HMA
Sbjct:  249 KPAKYDDIKRVVKAAAEGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDNFVKLVSWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.372e-18
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGAS E++   IK A++G +KG+L YT + VV +D +G++ SSIFD + GI  + +F KLVSW+  EWGY  RV D++ H+A V A
Sbjct:  251 KGASYEEITETIKKAADGPLKGVLAYTGDDVVSSDMLGNTNSSIFDIKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLAHVAKVDA 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PHARH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffia rhodozyma GN=GPD PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 45/83 (54.22%), Postives = 58/83 (69.88%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEG-SMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            KGAS E++K  IK AS+   +KGIL YTD+ VV  DF GDS SS FDA+ GI  + +F KLVSW+  EWGY  RV D++ ++A
Sbjct:  250 KGASYEEIKETIKKASQTPELKGILNYTDDQVVSTDFTGDSASSTFDAQGGISLNGNFVKLVSWYDNEWGYSARVCDLVSYIA 332          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_SHIFL (Glyceraldehyde-3-phosphate dehydrogenase A OS=Shigella flexneri GN=gapA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_SALTY (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhimurium GN=gapA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3P1_YEAST4.879e-1852.44Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P1_KLUMA4.879e-1850.00Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Kluy... [more]
G3P_SCHCO6.372e-1852.44Glyceraldehyde-3-phosphate dehydrogenase OS=Schizo... [more]
G3P_PICAN6.372e-1854.32Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_DROHY6.372e-1850.62Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_COTJA6.372e-1854.88Glyceraldehyde-3-phosphate dehydrogenase OS=Coturn... [more]
G3P2_TRIKO6.372e-1848.84Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]
G3P_PHARH8.322e-1854.22Glyceraldehyde-3-phosphate dehydrogenase OS=Phaffi... [more]
G3P1_SHIFL8.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase A OS=Shig... [more]
G3P1_SALTY8.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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