CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_SALTI (Glyceraldehyde-3-phosphate dehydrogenase OS=Salmonella typhi GN=gapA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ECOLI (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli (strain K12) GN=gapA PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ECOL6 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O6 GN=gapA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ECO57 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia coli O157:H7 GN=gapA PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 8.322e-18
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KAATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_NEUCR (Glyceraldehyde 3-phosphate-dehydrogenase OS=Neurospora crassa GN=gpd-1 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 43/86 (50.00%), Postives = 60/86 (69.77%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGA+ +++K  IK ASEG + GIL YT++ VV +D  G+  SSIFDA+ GI  + +F KLVSW+  EWGY  RV D+I +++ V A
Sbjct:  250 KGATYDEIKEVIKKASEGPLAGILAYTEDEVVSSDMNGNPASSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLISYISKVDA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_CANGA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Candida glabrata GN=GPD1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.087e-17
Identity = 45/80 (56.25%), Postives = 58/80 (72.50%), Query Frame = -1
Query:   59 AKGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIE 298
            AK  + +++KAAIK ASEG MKGIL YT++ VV  DF+GD+ SSIFDA  GI  S  F KLVSW+  E+G+  RV D++E
Sbjct:  248 AKDVTYDEIKAAIKKASEGEMKGILAYTEDAVVSTDFLGDTHSSIFDASAGIQLSPRFVKLVSWYDNEYGFSARVVDMVE 327          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_ONCVO (Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchocerca volvulus PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 44/82 (53.66%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            KGAS +++KAA+K A+ G MKGIL YT++ VV +DFVGD  SSIFDA   I  + +F KL++W+  E+GY NRV D+I + A
Sbjct:  256 KGASMDEIKAAVKEAAAGPMKGILEYTEDQVVSSDFVGDPHSSIFDALACISLNPNFVKLIAWYDNEYGYSNRVVDLISYNA 337          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_EMENI (Glyceraldehyde-3-phosphate dehydrogenase OS=Emericella nidulans GN=gpdA PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            K  + + +K A+K ASE  +KGILGYT++ +V  D  GD+ SSIFDA+ GI  +++F KLVSW+  EWGY  RV D+I +++ V A
Sbjct:  250 KAVTYDQIKDAVKKASENELKGILGYTEDDIVSTDLNGDTRSSIFDAKAGIALNSNFIKLVSWYDNEWGYSRRVVDLITYISKVDA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CLAPU (Glyceraldehyde-3-phosphate dehydrogenase OS=Claviceps purpurea GN=GPD-1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 39/86 (45.35%), Postives = 62/86 (72.09%), Query Frame = -1
Query:   38 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 295
            KGA+ +++KA +K A+ GS+ GILGYT++ +V +D  G++ SSIFDA+ GI  + +F KL++W+  EWGY  RV D++ ++A   A
Sbjct:  250 KGATYDEIKATVKEAANGSLAGILGYTEDDIVSSDMNGNTNSSIFDAKAGISLNKNFVKLIAWYDNEWGYSRRVLDLLAYVAKADA 335          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_ASPOR (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus oryzae GN=gpdA PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 44/85 (51.76%), Postives = 59/85 (69.41%), Query Frame = -1
Query:   44 KGAS*EDVKAAIKYASE-GSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 295
            K  + ED+K  IK ASE G +KGILGYT++ +V  D +GD+ SSIFDA+ GI  +  F KLVSW+  EWGY  RV D+I +++ V
Sbjct:  251 KAVTYEDIKKTIKAASEEGELKGILGYTEDDIVSTDLIGDAHSSIFDAKAGIALNEHFIKLVSWYDNEWGYSRRVVDLIAYISKV 335          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3P1_SALTI8.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase OS=Salmon... [more]
G3P1_ECOLI8.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECOL68.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P1_ECO578.322e-1851.22Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_NEUCR1.087e-1750.00Glyceraldehyde 3-phosphate-dehydrogenase OS=Neuros... [more]
G3P1_CANGA1.087e-1756.25Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Cand... [more]
G3P_ONCVO1.420e-1753.66Glyceraldehyde 3-phosphate-dehydrogenase OS=Onchoc... [more]
G3P_EMENI1.420e-1748.84Glyceraldehyde-3-phosphate dehydrogenase OS=Emeric... [more]
G3P_CLAPU1.420e-1745.35Glyceraldehyde-3-phosphate dehydrogenase OS=Clavic... [more]
G3P_ASPOR1.420e-1751.76Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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