CF834653

Overview
NameCF834653
Unique NameCF834653
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length298
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chlamydomonas reinhardtii GN=GAPC PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 44/82 (53.66%), Postives = 55/82 (67.07%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K  + ED+  A+K ASEG MKG+L YTDE VV +DFV D  S   DA+ GI  S +F KLV+W+  EWGY NRV D+  H+A
Sbjct:  253 KATTYEDIMKALKEASEGEMKGVLAYTDEDVVSSDFVTDPASCTVDAKAGIMLSPTFVKLVAWYDNEWGYSNRVVDLALHVA 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.420e-17
Identity = 42/82 (51.22%), Postives = 60/82 (73.17%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E +KAA+K A+EG MKG+LGYT++ VV  DF G+  +S+FDA+ GI  + +F KLVSW+  E GY N+V D+I H++
Sbjct:  249 KPATYEQIKAAVKAAAEGEMKGVLGYTEDDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHIS 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_PARBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=GPD PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = -1
Query:   38 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALVGA 280
            + +KAA+K ASEG +KGILGY+++ +V  D  GD  SSIFDA  GI  +  F KL+SW+  EWGY  RV D+I ++A V A
Sbjct:  256 DQIKAAVKAASEGELKGILGYSEDALVSTDLNGDPRSSIFDASAGIALNDRFVKLISWYDNEWGYSRRVLDLIAYIAKVDA 336          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_HUMAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Homo sapiens GN=GAPDH PE=1 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A  +D+K  +K ASEG +KGILGYT+  VV +DF  D+ SS FDA  GI  +  F KL+SW+  E+GY NRV D++ HMA
Sbjct:  251 KPAKYDDIKKVVKQASEGPLKGILGYTEHQVVSSDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 332          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_FELCA (Glyceraldehyde-3-phosphate dehydrogenase OS=Felis catus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 43/82 (52.44%), Postives = 56/82 (68.29%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A  +D+K  +K ASEG +KGILGYT++ VV  DF  D+ SS FDA  GI  +  F KL+SW+  E+GY NRV D++ HMA
Sbjct:  249 KAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSSTFDAGAGIALNDHFVKLISWYDNEFGYSNRVVDLMAHMA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_DEBHA (Glyceraldehyde-3-phosphate dehydrogenase OS=Debaryomyces hansenii GN=GPD PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A+ E++  AIK AS G +KGILGYT++ VV  DF+G   SSIFD + GI  S +F KL+SW+  E+GY  RV D++EH+A
Sbjct:  250 KSATYEEISEAIKAASNGELKGILGYTEDAVVSTDFLGSDYSSIFDQKAGILLSPTFVKLISWYDNEFGYSTRVVDLLEHVA 331          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A  ED+K  +K ASEG +KGILGYT++ VV  DF  DS SS FDA  GI  + +F KL+SW+  E+GY NRV D++ +MA
Sbjct:  249 KPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P_CHICK (Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus gallus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K A  +D+K  +K A++G +KGILGYT++ VV  DF GDS SS FDA  GI  +  F KLVSW+  E+GY NRV D++ HMA
Sbjct:  249 KPAKYDDIKRVVKAAADGPLKGILGYTEDQVVSCDFNGDSHSSTFDAGAGIALNDHFVKLVSWYDNEFGYSNRVVDLMVHMA 330          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3PC_CHOCR (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Chondrus crispus GN=GAPC PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 41/79 (51.90%), Postives = 56/79 (70.89%), Query Frame = -1
Query:   44 EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMALV 280
            ED+KA +K A++ SMKGI+ YT++ VV  DF+ D  S IFDA  GI  ++ F KLV+W+  EWGY NRV D+I H++ V
Sbjct:  256 EDIKATMKAAADDSMKGIMKYTEDAVVSTDFIHDDASCIFDASAGIMLNSKFCKLVAWYDNEWGYSNRVVDLIAHISKV 334          
BLAST of CF834653 vs. ExPASy Swiss-Prot
Match: G3P3_CAEEL (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caenorhabditis elegans GN=gpd-3 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.421e-17
Identity = 44/82 (53.66%), Postives = 57/82 (69.51%), Query Frame = -1
Query:   50 KGAS*EDVKAAIKYASEGSMKGILGYTDEHVVFNDFVGDSGSSIFDAEVGIGSSASFRKLVSWFGFEWGYINRVWDIIEHMA 295
            K AS +D+K  IK A++G MKGIL YT++ VV  DFV D+ SSIFDA   I  +  F KLVSW+  E+GY NRV D+I ++A
Sbjct:  257 KPASLDDIKKVIKAAADGPMKGILAYTEDQVVSTDFVSDTNSSIFDAGASISLNPHFVKLVSWYDNEFGYSNRVVDLISYIA 338          
The following BLAST results are available for this feature:
BLAST of CF834653 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 180
Match NameE-valueIdentityDescription
G3PC_CHLRE1.420e-1753.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P1_ESCF31.420e-1751.22Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3P_PARBA2.421e-1751.85Glyceraldehyde-3-phosphate dehydrogenase OS=Paraco... [more]
G3P_HUMAN2.421e-1752.44Glyceraldehyde-3-phosphate dehydrogenase OS=Homo s... [more]
G3P_FELCA2.421e-1752.44Glyceraldehyde-3-phosphate dehydrogenase OS=Felis ... [more]
G3P_DEBHA2.421e-1752.44Glyceraldehyde-3-phosphate dehydrogenase OS=Debary... [more]
G3P_CRIGR2.421e-1753.66Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3P_CHICK2.421e-1753.66Glyceraldehyde-3-phosphate dehydrogenase OS=Gallus... [more]
G3PC_CHOCR2.421e-1751.90Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P3_CAEEL2.421e-1753.66Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O08_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834653 ID=CF834653; Name=CF834653; organism=Citrus sinensis; type=EST; length=298bp
TGCACCCACCCCAAACCGGTTTTACTGTTTAGTTGGGGGCCCCTACCAAT
GCCATGTGCTCAATGATGTCCCACACTCGATTGATGTATCCCCACTCGAA
GCCGAACCATGACACAAGCTTCCTGAAGGATGCACTCGATCCAATCCCAA
CCTCCGCATCAAATATACTTGACCCCGAGTCTCCAACAAAGTCATTAAAT
ACAACATGCTCATCTGTGTATCCAAGAATGCCTTTCATCGAACCCTCCGA
TGCATACTTTATGGCGGCTTTGACATCTTCCTAGGAAGCACCCTTTGC
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