CF834662

Overview
NameCF834662
Unique NameCF834662
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length560
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834662 vs. ExPASy Swiss-Prot
Match: METE_SYNJB (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Synechococcus sp. GN=metE PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.684e-12
Identity = 57/183 (31.15%), Postives = 91/183 (49.73%), Query Frame = 2
Query:    2 FIVPELGPDVKFSYASHKAVTEYKEAKG-LGVETVPVLIGPVSYLLLSKPAKGVAKTFXXXXXXXXXXXXXXEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKS-GFPAGKYLFAGVVDGRNIW 544
            ++VPE+ P+   S      +   + A+G LG  T PV++ PV+ L LS+ +  +                  +++ ELK  G   +Q  +P+LV    S    A   +Y +L +  +G+ V + TYF D+  E +  +  L  V     D  RG  TL+L+++ GFPA + L AGVVD RN+W
Sbjct:  118 YLVPEIEPEADPSPNFGDFLERVRRAQGILGERTSPVVLSPVTLLCLSQRSGDLRADLEKLLPLYR------DLLQELKQLGIPEVQIHDPILVTSQGSGLREAVEMSYRQLAT--AGIPVHLVTYFDDL-GETYPWVVQLP-VAGISLDFTRG-HTLDLVRTYGFPADQILGAGVVDARNVW 289          
BLAST of CF834662 vs. ExPASy Swiss-Prot
Match: METE_DESVH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=metE PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.751e-12
Identity = 56/197 (28.43%), Postives = 84/197 (42.64%), Query Frame = 2
Query:    2 FIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFXXXXXXXXXXXXXXEVISELKAA-------GASWIQFDEPLLVMDLDSHKLHAFSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLELIKSGFPAGK-----YLFAGVVDGRNIWANDL 556
            ++VPEL  D  F+  +   V + +EA+  G     VL GP+++L L++   G  +                E+ S    A       G   +Q DEP+L +DL       F   Y  L + +    ++V +YFA   A+      +L  V     DLVRG   L+       AG+      L  GVVDGRN+W  D+
Sbjct:  129 YLVPELDADTAFAPDASPLVAQLREAQDAGFTPKAVLPGPLTWLWLARSVDGSDRFALLPALCDAYATLLRELTSACPPACPRGYSSGGLMVQLDEPVLALDLPQTVRDLFPAVYTRLRAAVPDATLMVASYFAPC-ADNLPVALNLP-VDVLHLDLVRGRDDLDAALQVLGAGEGTPGLALSLGVVDGRNVWCADI 323          
BLAST of CF834662 vs. ExPASy Swiss-Prot
Match: METE_CHLRE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.425e-11
Identity = 61/201 (30.35%), Postives = 94/201 (46.77%), Query Frame = 2
Query:    2 FIVPELGPDVKFSYASHKAVTEY------KEAKGLGVE----TVPVLIGPVSYLLLSKPAKGVAKTFXXXXXXXXXXXXXXEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRG------TKTLELIKS-GFPAGKYLFAGVVDGRNIWAND 553
            ++VPELGPDV     +   +         K A+G  V      VP+LIGPV+++ LS+  +                     ++ +L AAGA  +Q  EP+L     +     F  AYA++      + + + TY+ D+ A A+     L  V A   D +        ++TL L++  GFPA K L AGVVDGR++W +D
Sbjct:  113 YLVPELGPDVLGPATAGPPLQPDFSGPLDKLARGQAVVGRDGAVPILIGPVTFVSLSRGCE-----LPLDQAVARLLPTYCALLQQLAAAGAPEVQLHEPVLATSEGTGMPTEFETAYAQMAQAAGSVPLHLVTYYDDLGA-AYPWAVQLP-VAAVTLDFLGPPGAAVPSQTLALLQQHGFPADKRLGAGVVDGRSVWKDD 306          
BLAST of CF834662 vs. ExPASy Swiss-Prot
Match: METE_THESQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga sp. (strain RQ2) GN=metE PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 2
Query:    2 FIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSK-PAKGVAKTFXXXXXXXXXXXXXXEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLE-LIKSGFPAGKYLFAGVVDGRNIWANDL 556
            ++VPE+  + +F    +K + +Y   K  G+ET P +IGP ++L LSK   + + +                EV  +L   G   I  +EP  V DL+          Y E    LS   + V TY+  V    ++   SL  V    FD V   + L+ L K GFP  K L AGV++GR  W  DL
Sbjct:  112 YLVPEIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEWIRRPNQMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRE----LSEFPLTVFTYYDSV--SDYEACVSLP-VKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDL 290          
BLAST of CF834662 vs. ExPASy Swiss-Prot
Match: METE_THEMA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Thermotoga maritima GN=metE PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.175e-11
Identity = 58/187 (31.02%), Postives = 84/187 (44.92%), Query Frame = 2
Query:    2 FIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSK-PAKGVAKTFXXXXXXXXXXXXXXEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFSEAYAELESTLSGLNVLVETYFADVPAEAFQTLTSLKGVTAYGFDLVRGTKTLE-LIKSGFPAGKYLFAGVVDGRNIWANDL 556
            ++VPE+  + +F    +K + +Y   K  G+ET P +IGP ++L LSK   + + +                EV  +L   G   I  +EP  V DL+          Y E    LS   + V TY+  V    ++   SL  V    FD V   + L+ L K GFP  K L AGV++GR  W  DL
Sbjct:  112 YLVPEIETE-EFYLLENKPLEDYLFFKSKGIETAPWVIGPFTFLYLSKRNGEWIRRPNQMEKLLESLVSVYKEVFEKLVENGCKEILVNEPAFVCDLEKAHWDLILNVYRE----LSEFPLTVFTYYDSV--SDYEACVSLP-VKRLHFDFVSNEENLKNLEKHGFPEDKKLVAGVINGRQPWKVDL 290          
The following BLAST results are available for this feature:
BLAST of CF834662 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 265
Match NameE-valueIdentityDescription
METE_SYNJB1.684e-1231.155-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_DESVH3.751e-1228.435-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHLRE1.425e-1130.355-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THESQ3.175e-1131.025-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_THEMA3.175e-1131.025-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O13_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834662 ID=CF834662; Name=CF834662; organism=Citrus sinensis; type=EST; length=560bp
TTTCATTGTTCCTGAATTGGGACCCGATGTTAAGTTCTCCTACGCTTCCC
ACAAGGCTGTGACTGAGTACAAGGAGGCTAAGGGGCTTGGAGTTGAAACT
GTCCCAGTGCTTATTGGCCCTGTGTCATACTTGTTGCTGTCTAAGCCTGC
CAAGGGTGTTGCGAAGACCTTTTCTCTTCTTTCTCTTCTTCCGAAAATCC
TTCCAATCTACAAGGAAGTTATTTCTGAGCTTAAGGCTGCTGGTGCTTCC
TGGATTCAGTTTGATGAGCCATTGCTTGTTATGGATCTTGACTCACACAA
ATTGCATGCATTCAGTGAGGCTTATGCCGAGCTAGAGTCAACTCTGTCTG
GCTTGAATGTTCTTGTTGAGACCTACTTTGCTGATGTTCCAGCTGAGGCA
TTCCAGACCCTCACTTCTTTGAAGGGTGTCACCGCTTATGGATTTGATTT
GGTTCGTGGAACGAAGACCCTTGAATTGATCAAGAGTGGATTCCCTGCTG
GCAAGTACCTCTTTGCTGGAGTGGTTGATGGAAGGAACATTTGGGCCAAT
GATCTTGCTG
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