CF834677

Overview
NameCF834677
Unique NameCF834677
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length732
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.262e-12
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 2 
Query:  401 MSVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARKALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            MS+LVTG AG++G+H  L+L +RGD VV LDN +N    S+ +  K  L        EGD+ D   L  +F A   + V+H A    V  + + P  Y  +N+ G + LL
Sbjct:    1 MSILVTGGAGYIGSHTVLSLLQRGDDVVILDNLSNASRESINRVEK--LTGKTATFFEGDLLDRSCLRSVFSAHRISAVIHFAGLKAVGASTRKPLEYYQNNVTGTLVLL 108
[Close]
BLAST of CF834677 vs. ExPASy Swiss-Prot
Match: GALE3_ARATH (UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana GN=At4g23920 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.068e-11
Identity = 41/110 (37.27%), Postives = 62/110 (56.36%), Query Frame = 2 
Query:  404 SVLVTGAAGFVGTHVSLALKKRGDGVVGLDNFNNYYDPSLKKARK-ALLNNHGIFVIEGDINDAKLLAKLFDAVAFTHVMHLAAQAGVRYAMQNPHSYVHSNIAGLVTLL 730
            SVLVTG AG++G+H  L L + G   V +DN++N    SL++ +K A  N + +   + D+ D   L K+F    F  V+H A    V  +++ P  Y ++NI G VTLL
Sbjct:    4 SVLVTGGAGYIGSHTVLQLLEGGYSAVVVDNYDNSSAASLQRVKKLAGENGNRLSFHQVDLRDRPALEKIFSETKFDAVIHFAGLKAVGESVEKPLLYYNNNIVGTVTLL 113
The following BLAST results are available for this feature:
BLAST of CF834677 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
GALE_ERWAM1.262e-1237.27UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]
GALE3_ARATH1.068e-1137.27UDP-glucose 4-epimerase 3 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05O23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834677 ID=CF834677; Name=CF834677; organism=Citrus sinensis; type=EST; length=732bp
CATCTATTACTTCTCTTACCATTTCAATCCAATCCAAAACCAAATCCAAC
CCGGTTTCACCTTTCCTTCTAAACAAACAAACCAACCCAGAAAAGGGAAA
ATAATAAAGATTCGAAGATTCTAGAGAAAAATGCCGTCTTTAGAAGATGA
GCTGTTCCCGTCGACGCCGGGGAAATTCAAGATTGAAAGATCCAACACTA
TGAACCGCCAGTTTCACCGGTGTTTCACCTCAACGAGTACCATGTTCTTG
TGGGCTCTTTTCTTGGTTGCTTTAACGGCGTCGTATTTGAGTTTTCAGTC
TTTTGTCGATTCCGGTAGCCGGTACTTTTCCGCTTCTTGGGGAGGTATCC
AGTGGGAGAAACATGTCAGGAGCTCCGCTCAGATCCATCGGTCTGGTGGG
ATGTCGGTGCTGGTTACCGGTGCAGCCGGTTTCGTTGGGACCCACGTGTC
TTTGGCTTTAAAGAAACGCGGAGACGGCGTCGTTGGACTCGACAATTTCA
ATAACTACTACGATCCCTCATTGAAGAAGGCGAGGAAGGCTTTGTTGAAC
AACCATGGCATTTTTGTAATTGAAGGTGATATCAATGACGCGAAATTATT
AGCCAAGCTCTTTGACGCTGTGGCTTTTACGCACGTGATGCATTTAGCGG
CTCAAGCCGGTGTTAGATACGCGATGCAGAATCCCCACTCGTACGTGCAC
AGCAATATCGCTGGCCTCGTCACGCTCCTTGA
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