CF834682

Overview
NameCF834682
Unique NameCF834682
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1498 contig Csv1_Contig1498:80..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SOLLC (Nucleoside diphosphate kinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 1.826e-62
Identity = 116/144 (80.56%), Postives = 126/144 (87.50%), Query Frame = 2
Query:   65 FIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 496
            FIMIKPDGVQRGLVGEII RFEKKGFSLKGLKL+TVDR FAEKHY DLS+KPFF  L+EYI SGPVVAM+WEG+GVV TGR IIGATNP +SA GTIRGD AI  GRN+IHGSD+VESA+KEIALWFP+G   WQSSLH  IYE
Sbjct:    1 FIMIKPDGVQRGLVGEIISRFEKKGFSLKGLKLITVDRAFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKIIGATNPLESAAGTIRGDFAIDIGRNVIHGSDAVESARKEIALWFPEGIAEWQSSLHSCIYE 144          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.385e-62
Identity = 113/148 (76.35%), Postives = 125/148 (84.46%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 496
            ME TFIMIKPDGVQRGL+GEII RFEKKGF LK LKL+ V+R FAEKHY DLSSKPFF  L++YI SGPVVAM+WEG+ VV TGR IIGATNP  S PGTIRGD A+  GRN+IHGSDS+ESA KEIALWFP+G  +WQSS HPWIYE
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIESANKEIALWFPEGLADWQSSQHPWIYE 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.223e-59
Identity = 104/148 (70.27%), Postives = 125/148 (84.46%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 496
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 3.223e-59
Identity = 104/148 (70.27%), Postives = 125/148 (84.46%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPINWQSSLHPWIYE 496
            MEQ+FIMIKPDGVQRGL+G+II RFEKKGF L+G+K M V+R FA++HY DLS KPFF  L+EYI SGPVVAM+WEG+ VV TGR IIGAT P ++APGTIR D A+  GRN+IHGSDSV++ +KEIALWFP+G   W+S+LHPWIYE
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEGLAEWRSNLHPWIYE 148          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK2_TOBAC (Nucleoside diphosphate kinase 2, chloroplastic OS=Nicotiana tabacum GN=NDPK2 PE=1 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 3.816e-52
Identity = 96/153 (62.75%), Postives = 120/153 (78.43%), Query Frame = 2
Query:   41 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            +++E+E+T+IMIKPDGVQRGLVGEII RFEKKGF L GLKL    +  AE+HY+DL SKPFF  LI+YITSGPVV M WEG GVV + R +IGATNP  + PGTIRGDLA+ TGRN++HGSDS ++ ++EIALWF +G + +W     PW+ E
Sbjct:   80 SMEEVEETYIMIKPDGVQRGLVGEIISRFEKKGFKLTGLKLFHCPKELAEEHYKDLQSKPFFPKLIDYITSGPVVCMAWEGVGVVASARKLIGATNPLNAEPGTIRGDLAVQTGRNVVHGSDSPDNGKREIALWFGEGELCSWTPVQEPWLIE 232          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_SYNY3 (Nucleoside diphosphate kinase OS=Synechocystis sp. (strain PCC 6803) GN=ndk PE=1 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 2.473e-51
Identity = 92/149 (61.74%), Postives = 118/149 (79.19%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPIN-WQSSLHPWIYE 496
            ME+TFIMIKPDGVQR L+GEI+ RFEKKGF L  +K+MTV +  AEKHYE L+ KPFF  L+ +I S PVVAM+WEG  +V T R +IGAT+P  +APGTIRGD  +  GRNIIHGSD++E+A++EI+LWF D  +N W ++L+PW+YE
Sbjct:    1 MERTFIMIKPDGVQRQLIGEIVGRFEKKGFKLVAMKVMTVSQELAEKHYEALNDKPFFSGLVNFICSSPVVAMVWEGNSIVSTSRQMIGATDPHAAAPGTIRGDYGVSVGRNIIHGSDAIETAKREISLWFKDEEVNEWDATLNPWLYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.399e-51
Identity = 96/149 (64.43%), Postives = 116/149 (77.85%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 496
            ME+TF+ IKPDGVQRGLVGEII RFE KGF+L GLK + V +  AE+HY     +PFFGSL+E+ITS PVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  I  GRN+IHGSD+ E+AQ+EIALWF D   +NWQ  + PW++E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_CYAP4 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=ndk PE=3 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.399e-51
Identity = 96/149 (64.43%), Postives = 116/149 (77.85%), Query Frame = 2
Query:   53 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            ME+TF+ +KPDGVQR LVGEII RFE KGF L GLKLM V +  AE+HY +   KPFF  L+++ITSGPVVAM+WEG+GVV + R IIGATNP  S PGTIRGD  +  GRNIIHGSD+VE+AQ+EIALWF P   ++W+ +L  WIYE
Sbjct:    1 MERTFLAVKPDGVQRALVGEIIRRFEAKGFKLVGLKLMNVSKDLAEQHYGEHKEKPFFPGLVQFITSGPVVAMVWEGKGVVASARKIIGATNPLNSEPGTIRGDYGVDIGRNIIHGSDAVETAQREIALWFQPAELVSWEPTLTSWIYE 149          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK2_ARATH (Nucleoside diphosphate kinase II, chloroplastic OS=Arabidopsis thaliana GN=NDPK2 PE=1 SV=2)

HSP 1 Score: 199.904 bits (507), Expect = 9.399e-51
Identity = 93/153 (60.78%), Postives = 121/153 (79.08%), Query Frame = 2
Query:   41 NLKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 496
            +++++E+T+IM+KPDG+QRGLVGEII RFEKKGF L GLK+    +  AE+HY+DLS+K FF +LIEYITSGPVV M WEG GVV + R +IG T+P Q+ PGTIRGDLA+ TGRNI+HGSDS E+ ++EI LWF +G +  W S+L  W+ E
Sbjct:   79 SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 231          
BLAST of CF834682 vs. ExPASy Swiss-Prot
Match: NDK_ASPFU (Nucleoside diphosphate kinase OS=Aspergillus fumigatus GN=ndk1 PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 1.227e-50
Identity = 95/148 (64.19%), Postives = 115/148 (77.70%), Query Frame = 2
Query:   56 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 496
            EQTFI IKPDGVQRGL+G II RFE +GF L  +KL++  +   E+HY DLS KPFF  L+ Y+ SGP+ AM+WEG  VVKTGRTI+GATNP  SAPGTIRGD AI  GRN+ HGSDSVE+A+KEIALWF P+  I+W+S+   W+YE
Sbjct:    4 EQTFIAIKPDGVQRGLIGPIISRFENRGFKLVAMKLVSPPQSQLEQHYADLSDKPFFKGLVSYMLSGPICAMVWEGRDVVKTGRTILGATNPLASAPGTIRGDFAIDVGRNVCHGSDSVENAKKEIALWFKPEELISWKSATFDWVYE 151          
The following BLAST results are available for this feature:
BLAST of CF834682 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SOLLC1.826e-6280.56Nucleoside diphosphate kinase (Fragment) OS=Solanu... [more]
NDK1_SACOF2.385e-6276.35Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]
NDK1_ORYSJ3.223e-5970.27Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI3.223e-5970.27Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK2_TOBAC3.816e-5262.75Nucleoside diphosphate kinase 2, chloroplastic OS=... [more]
NDK_SYNY32.473e-5161.74Nucleoside diphosphate kinase OS=Synechocystis sp.... [more]
NDK_NOSP79.399e-5164.43Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDK_CYAP49.399e-5164.43Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK2_ARATH9.399e-5160.78Nucleoside diphosphate kinase II, chloroplastic OS... [more]
NDK_ASPFU1.227e-5064.19Nucleoside diphosphate kinase OS=Aspergillus fumig... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05P02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834682 ID=CF834682; Name=CF834682; organism=Citrus sinensis; type=EST; length=648bp
TGCTATTTCACTCTTTTCTCAAAACAAGTTGGTTTCTCTGAATCTCAAAG
AAATGGAACAAACTTTCATCATGATCAAGCCCGATGGGGTCCAAAGAGGC
CTTGTTGGTGAAATCATCATCAGATTTGAGAAGAAGGGTTTCTCCTTGAA
GGGTTTGAAGCTTATGACTGTGGACCGCCCTTTTGCTGAGAAGCACTATG
AGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCTGATTGAGTACATTACC
TCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTGAAGGTGTTGTTAAGAC
TGGCCGCACTATTATTGGAGCCACCAACCCTGCGCAGTCTGCTCCTGGAA
CCATCCGTGGTGATTTGGCTATCGTGACGGGCAGGAATATCATCCATGGA
AGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCGCCTTGTGGTTCCCTGA
TGGCCCTATTAACTGGCAGAGCAGCCTTCACCCTTGGATCTATGAGTAAA
CTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGCAGTTAGACTTATCCCT
ATCCCTATCCCTATTTCCTTATTTATGGTTACTCCTTGTTGGTGAACTGT
TATGAAGTATTGAGTTAAATTGAGACCAATCCTGGTTATGTTGGCTGC
back to top