CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACSF2_BOVIN (Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 54/187 (28.88%), Postives = 86/187 (45.99%), Query Frame = -3
Query:  177 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMPL 737
            K+ S G V+ + E ++++ E G     N  GE+CIRG  +M GY  +P+ T   I  + W  T                R K++I   G  + P+E+E    +HP + +  VV  KD+  GE   A +    G +   E IK +   ++  +K    I FV   P + SGKI +  LR ++   + L
Sbjct:  429 KAESVGRVMPHTEAQIVNTETGTLTELNTPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRLKEGEKTTAEEIKAFCKGKISHFKIPRYIVFVTNYPLTVSGKIQKFKLREQMEQHLNL 615          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACSA_PYRAR (Acetyl-coenzyme A synthetase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=acsA PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.480e-16
Identity = 61/194 (31.44%), Postives = 97/194 (50.00%), Query Frame = -3
Query:  177 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQ--IMKGYLNDPEATAAII--DVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEE---AIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMPL 737
            K G+ G  +   E+ V+D E G  +P   +G + I+ P   ++ G   DPE           G  +                 R  E+IK  G ++   E+E+  ++HP++A+AAVV   D + GEVP+AFVV   G    EE    ++E+I K +       +I+FV  +PK+ SGKI+R+ L+A +A+  PL
Sbjct:  450 KPGTNGPPLPGFEVDVVD-ENGNPVPPGVKGYLVIKKPWPGMLHGIWGDPERYVKTYWSRFPGMFYVGDYAIKDKDGYIWVLGRADEVIKVAGHRLGTYELESAFVAHPAVAEAAVVGVPDAIKGEVPIAFVVLKQGVTPTEELRKELREHIRKSIGPIAEPAQIFFVTKLPKTRSGKIMRRLLKA-VATGAPL 641          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_LISMO (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes GN=menE PE=3 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 1.238e-15
Identity = 56/180 (31.11%), Postives = 89/180 (49.44%), Query Frame = -3
Query:  198 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAK 737
            K GS G  +  AE+K+ D            GEI ++GP I  GYL++ +AT A   V+GW  T               +R  ++I   G  + P+EIE ++  + ++ + AV+ Q D+  G VPVAF+V    F+  E+ ++      +  YK   +I  V  +PK+ SGKI R  L+ +
Sbjct:  299 KIGSSGKALFPAEVKIADD-----------GEILLKGPSITPGYLHNKKATEASF-VDGWFKTGDIGYLDEEGFLFVVERRSDLIISGGENIYPTEIEHVIGEYVAVKEVAVIGQPDDKWGSVPVAFIVAEETFD--EDELQLICQTNLASYKIPKQIIIVEKLPKTASGKIQRNKLKER 464          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACSM2_RAT (Acyl-coenzyme A synthetase ACSM2, mitochondrial OS=Rattus norvegicus GN=Acsm2 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 59/190 (31.05%), Postives = 93/190 (48.95%), Query Frame = -3
Query:  198 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQI-----MKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGF-----ELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAK 737
            K G  GT +   +++VID E G  LP    G++ +R   I       GY+++P+ T A I  + WL                  R  +II   G+++ PSE+E  L+ HP++ + AV+   D +  EV  AFVV +  F     +   + ++E++      YK   K+ FV  +PK+ +GKI R  LRAK
Sbjct:  379 KPGYLGTAIVPYDVQVID-EQGNVLPPGKEGDMALRVKPIRPIGMFSGYVDNPKKTQANIRGDFWL-LGDRGIKDTEGYFHFMGRTDDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPIRREVVKAFVVLAPEFLSHDQDQLTKVLQEHVKSVTAPYKYPRKVEFVLDLPKTITGKIERAKLRAK 566          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACSF3_BOVIN (Acyl-CoA synthetase family member 3, mitochondrial OS=Bos taurus GN=ACSF3 PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.617e-15
Identity = 47/151 (31.13%), Postives = 72/151 (47.68%), Query Frame = -3
Query:  195 GEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKL 647
            GE+ +RGP + + Y + PE T A    +GW  T                   +IIK  G++V   E+E LLL+HPSI D AV+   D   G+   A V    G  L+   +KE+    +  Y    ++  V  IP++  GK+ ++DL  +L
Sbjct:  423 GELLVRGPSVFREYWDKPEETKAAFTSDGWFKTGDTVVFKDGCYWIRGRTSVDIIKSGGYKVSALEVERLLLAHPSITDVAVIGVPDMTWGQRVTAVVTLQEGHSLSHRELKEWARGVLAPYAVPSELLLVEEIPRNQMGKVNKRDLVRQL 573          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_OCEIH (2-succinylbenzoate--CoA ligase OS=Oceanobacillus iheyensis GN=menE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 55/177 (31.07%), Postives = 88/177 (49.72%), Query Frame = -3
Query:  207 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDL 737
            K GS G  +  A+LK+  +E       N  GEI ++GP + KGY    E    + +   WLHT               DR  ++I   G  + PSEIE +L+    I +A V    +E  G VP+AF+V S    ++E  I  ++ K +  YKR  +I+ V+ +P++ + K++R +L
Sbjct:  309 KIGSAGKPLFPAQLKIAHNENNP----NQIGEILVKGPMVTKGYYKRAETNKEVFE-NNWLHTGDMGYLDEQGYLYVVDRRNDLIISGGENIYPSEIENVLVQIEGIEEAGVKGSPNEEWGMVPIAFIVCSR--PISENEIAAHLEKYLAKYKRPKEIHVVNELPRNAANKLVRHNL 478          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: MENE_LISMF (2-succinylbenzoate--CoA ligase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=menE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 56/180 (31.11%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  198 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAK 737
            K GS G  +  AE+K+ D            GEI ++GP I  GYL++ +AT A   V+GW  T               +R  ++I   G  + P+EIE ++  +  + + AV+ + D+  G VPVAF+V    F+ AE  ++      +  YK   +I  V  +PK+ SGKI R  L+ +
Sbjct:  299 KIGSSGKALFPAEVKIADD-----------GEILLKGPSITPGYLHNKKATEASF-VDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEYEGVKEVAVIGKPDDKWGSVPVAFIVAEETFDEAE--LRLICETNLAGYKIPKQITIVEKLPKTASGKIQRNKLKER 464          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_CITK8 (Probable crotonobetaine/carnitine-CoA ligase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=caiC PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.758e-15
Identity = 55/165 (33.33%), Postives = 79/165 (47.88%), Query Frame = -3
Query:  204 IDHEVGASLPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 689
            I  E   SLP    GEICI+G     I K Y   PEATA  ++  GWLHT               DR   +IK  G  V   E+E ++ +HP I D  V+   D +  E   AFVV + G  L EE    +  + +  +K    +   + +P++ SGKI++K+L+
Sbjct:  353 IRDEQNRSLPAGEIGEICIKGVPGKTIFKEYYARPEATAKALEANGWLHTGDSGYRDEEGFFYFVDRRCNMIKRGGENVSCIELENIISAHPKIQDIVVIGIHDSIRDEAIKAFVVLNEGETLTEEEFFAFCEQNMAKFKVPSFLEIRNDLPRNCSGKIIKKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_SALPC (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella paratyphi C (strain RKS4594) GN=caiC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = -3
Query:  204 SCGTVVRNAELKVIDHEVGASLPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHA-IPKSPSGKILRKDLR 728
            S G V  + E ++ D +    LP    GEICI+G     I K Y   PEATA  ++ EGWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AF+V + G  L+E     +    +  +K +P    +   +P++ SGKI++K+L+
Sbjct:  341 SIGRVGFSYEAEIRDDQ-NRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFK-VPSFMEIRTDLPRNCSGKIIKKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_SALCH (Probable crotonobetaine/carnitine-CoA ligase OS=Salmonella choleraesuis GN=caiC PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.602e-15
Identity = 59/179 (32.96%), Postives = 87/179 (48.60%), Query Frame = -3
Query:  204 SCGTVVRNAELKVIDHEVGASLPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHA-IPKSPSGKILRKDLR 728
            S G V  + E ++ D +    LP    GEICI+G     I K Y   PEATA  ++ EGWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AF+V + G  L+E     +    +  +K +P    +   +P++ SGKI++K+L+
Sbjct:  341 SIGRVGFSYEAEIRDDQ-NRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAGALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIVVVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFK-VPSFMEIRTDLPRNCSGKIIKKNLK 517          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
ACSF2_BOVIN9.480e-1628.88Acyl-CoA synthetase family member 2, mitochondrial... [more]
ACSA_PYRAR9.480e-1631.44Acetyl-coenzyme A synthetase OS=Pyrobaculum arsena... [more]
MENE_LISMO1.238e-1531.112-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
ACSM2_RAT1.617e-1531.05Acyl-coenzyme A synthetase ACSM2, mitochondrial OS... [more]
ACSF3_BOVIN1.617e-1531.13Acyl-CoA synthetase family member 3, mitochondrial... [more]
MENE_OCEIH2.758e-1531.072-succinylbenzoate--CoA ligase OS=Oceanobacillus i... [more]
MENE_LISMF2.758e-1531.112-succinylbenzoate--CoA ligase OS=Listeria monocyt... [more]
CAIC_CITK82.758e-1533.33Probable crotonobetaine/carnitine-CoA ligase OS=Ci... [more]
CAIC_SALPC3.602e-1532.96Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]
CAIC_SALCH3.602e-1532.96Probable crotonobetaine/carnitine-CoA ligase OS=Sa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
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