CF834687

Overview
NameCF834687
Unique NameCF834687
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length739
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF834687_ssr517 microsatellite CF834687_ssr517:517..531. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_PROSL (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus sp. (strain LE138) GN=caiC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -3
Query:  204 LPHNHRGEICIRGPQ---IMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            +P+   GEIC++G     + K Y N P+AT   ++ +GWLHT               DR   +IK  G  V   EIE ++ SHP I D AV+   D++  E   AFVV  +G  L+EEA   +  + +  +K    + F   +P++ SGK+++K L+
Sbjct:  362 VPNGVVGEICVKGEAGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYRDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_PROMH (Probable crotonobetaine/carnitine-CoA ligase OS=Proteus mirabilis (strain HI4320) GN=caiC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 52/157 (33.12%), Postives = 81/157 (51.59%), Query Frame = -3
Query:  204 LPHNHRGEICIRGPQ---IMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            +P+   GEIC++G     + K Y N P+AT   ++ +GWLHT               DR   +IK  G  V   EIE ++ SHP I D AV+   D++  E   AFVV  +G  L+EEA   +  + +  +K    + F   +P++ SGK+++K L+
Sbjct:  362 VPNGVVGEICVKGEPGKTLFKEYYNRPDATEKALEPDGWLHTGDYGYQDDEGFFYFVDRSCNMIKRGGENVSCIEIENIIASHPKIQDVAVIGVPDDIRDEAIKAFVVLVDGETLSEEAFFAFCEQNMAKFKVPSAVEFKQGLPRNCSGKVIKKHLQ 518          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECO27 (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=caiC PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 55/157 (35.03%), Postives = 81/157 (51.59%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K L  +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFCFCEQNMAKFKVLSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACSF2_MOUSE (Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 8.574e-17
Identity = 55/187 (29.41%), Postives = 88/187 (47.06%), Query Frame = -3
Query:  177 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAKLASSMPL 737
            K+GS G ++ + E ++++ E G     N  GE+ IRG  +M+GY  +P+ T   +  + W  T                R K++I   G  + P+E+E   L HP + +A VV  KDE  GE   A +   +G     E IK +   ++  +K    I FV   P + SGKI +  LR ++   + L
Sbjct:  429 KAGSVGRIMPHTEAQIVNVETGELTNLNVPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRGGENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFCKGKISHFKIPRYIVFVEGYPLTISGKIQKFKLREQMEQHLKL 615          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_SHIDS (Probable crotonobetaine/carnitine-CoA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=caiC PE=3 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGVLGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKVLPRNCSGKIIRKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: ACS2A_HUMAN (Acyl-coenzyme A synthetase ACSM2A, mitochondrial OS=Homo sapiens GN=ACSM2A PE=1 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.120e-16
Identity = 62/190 (32.63%), Postives = 94/190 (49.47%), Query Frame = -3
Query:  198 KSGSCGTVVRNAELKVIDHEVGASLPHNHRGEICIRGPQI-----MKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGF-----ELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLRAK 737
            K G  GT     ++++ID + G  LP    G+I IR   I       GY+++P+ TAA I  + WL                  R  +II   G+++ PSE+E  L+ HP++ + AV+   D V GEV  AFVV ++ F     E   + +++++      YK   KI FV  +PK+ +GKI R  LR K
Sbjct:  379 KPGYMGTAASCYDVQIIDDK-GNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRANDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHVKSVTAPYKYPRKIEFVLNLPKTVTGKIQRAKLRDK 566          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLU (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGELGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLI (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECOLC (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
BLAST of CF834687 vs. ExPASy Swiss-Prot
Match: CAIC_ECODH (Probable crotonobetaine/carnitine-CoA ligase OS=Escherichia coli (strain K12 / DH10B) GN=caiC PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.463e-16
Identity = 54/157 (34.39%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  204 LPHNHRGEICIRG---PQIMKGYLNDPEATAAIIDVEGWLHTXXXXXXXXXXXXXXXDRVKEIIKFKGFQVPPSEIEALLLSHPSIADAAVVPQKDEVAGEVPVAFVVRSNGFELAEEAIKEYIAKQVVFYKRLPKIYFVHAIPKSPSGKILRKDLR 665
            LP    GEICI+G     I K Y  +P+ATA +++ +GWLHT               DR   +IK  G  V   E+E ++ +HP I D  VV  KD +  E   AFVV + G  L+EE    +  + +  +K    +     +P++ SGKI+RK+L+
Sbjct:  361 LPAGEIGEICIKGIPGKTIFKEYFLNPQATAKVLEADGWLHTGDTGYRDEEDFFYFVDRRCNMIKRGGENVSCVELENIIAAHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK 517          
The following BLAST results are available for this feature:
BLAST of CF834687 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 181
Match NameE-valueIdentityDescription
CAIC_PROSL8.574e-1733.12Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_PROMH8.574e-1733.12Probable crotonobetaine/carnitine-CoA ligase OS=Pr... [more]
CAIC_ECO278.574e-1735.03Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
ACSF2_MOUSE8.574e-1729.41Acyl-CoA synthetase family member 2, mitochondrial... [more]
CAIC_SHIDS1.120e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Sh... [more]
ACS2A_HUMAN1.120e-1632.63Acyl-coenzyme A synthetase ACSM2A, mitochondrial O... [more]
CAIC_ECOLU1.463e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLI1.463e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECOLC1.463e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]
CAIC_ECODH1.463e-1634.39Probable crotonobetaine/carnitine-CoA ligase OS=Es... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_05P12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834687 ID=CF834687; Name=CF834687; organism=Citrus sinensis; type=EST; length=739bp
ATAAGAATTATTAATTTTACCAAAATTTATTACAATAACCCTTTGGAAAA
CTACTCATCAGAATTACATATTACAAGCAAACATGATAATTTTTTTTGTC
ACACCATTTGAAGTTCTTGAATGCCAACAACTCAAAGGCGAACAAAAACT
AACGCAATAAATAAGAAGAATTAATTCAAGGGCATTGAAGAGGCCAGCTT
GGCTCTGAGATCTTTCCTCAAAATCTTACCGGAAGGAGATTTTGGAATCG
CATGAACAAAATAAATCTTGGGCAGTCTCTTGTAAAACACTACCTGTTTT
GCTATGTATTCTTTAATGGCTTCCTCGGCAAGTTCAAACCCATTTGATCG
AACTACAAATGCAACTGGAACTTCTCCTGCAACTTCATCTTTTTGCGGAA
CCACAGCTGCATCTGCAATTGATGGGTGGCTTAAAAGGAGGGCTTCAATC
TCCGACGGCGGCACCTGGAATCCTTTGAATTTGATGATTTCCTTGACCCT
ATCGACTATGAAAACCTCATCATCATCATCAACAAAGCCTATGTCACCAG
TATGAAGCCAACCCTCAACGTCTATAATTGCCGCAGTTGCCTCAGGATCA
TTCAAGTAACCTTTCATAATTTGAGGGCCGCGGATGCAAATTTCGCCACG
ATGATTGTGGGGAAGGGAGGCACCAACTTCATGGTCAATAACTTTGAGCT
CAGCATTTCTAACAACCGTGCCACATGATCCTGACTTTG
back to top