CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PORYE (Photosystem I assembly protein ycf3 OS=Porphyra yezoensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 2.797e-26
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL+NYYEA++LE DPYDRSYILYNIGLI+ SNGE+ KALEYY + LE N  LPQA NN+AVI H
Sbjct:   43 MSAQSEGEYAEALENYYEALKLEEDPYDRSYILYNIGLIYASNGEYVKALEYYHQGLELNFKLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PORPU (Photosystem I assembly protein ycf3 OS=Porphyra purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.653e-26
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL+NYYEA++LE DPYDRSYILYNIGLI+ SNGE+ KALEYY + LE N  LPQA NN+AVI H
Sbjct:   43 MSAQSEGEYAEALENYYEALKLEEDPYDRSYILYNIGLIYASNGEYIKALEYYHQGLELNFKLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_GALSU (Photosystem I assembly protein ycf3 OS=Galdieria sulphuraria GN=ycf3 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 3.653e-26
Identity = 56/75 (74.67%), Postives = 63/75 (84.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL NYYEA+ LE DPYD+S+ILYNIGLIH SNGE+ KAL+YY +ALE N  LPQA NN+AVI H
Sbjct:   43 MSAQSEGEYAEALANYYEALNLEEDPYDKSFILYNIGLIHASNGEYVKALDYYHKALEANNKLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_THEEB (Photosystem I assembly protein ycf3 OS=Thermosynechococcus elongatus (strain BP-1) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.813e-25
Identity = 55/75 (73.33%), Postives = 62/75 (82.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ++G YAEAL+NY  A+ LE DP DRSYILYNIGLIH SNGEH KALEYY +ALE NP +PQA NN+AVI H
Sbjct:   43 MSAQADGEYAEALENYQAALELEEDPTDRSYILYNIGLIHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_MICAN (Photosystem I assembly protein ycf3 OS=Microcystis aeruginosa (strain NIES-843) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.275e-25
Identity = 53/75 (70.67%), Postives = 61/75 (81.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ++G YAEAL NYYEA+ LE DP DRSYILYNIG+IH SNGEH KALEYY  A++ NP +P A NN+AVI H
Sbjct:   43 MSAQADGEYAEALDNYYEALTLEEDPNDRSYILYNIGIIHASNGEHEKALEYYEEAIQLNPRMPSALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ODOSI (Photosystem I assembly protein ycf3 OS=Odontella sinensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 6.889e-25
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL+NYYEA++LE DPYDRSY LYNIGLI+ +NG +++ALEYY +ALE N  LPQA NN+AVI H
Sbjct:   37 MSAQSEGKYAEALENYYEALQLEEDPYDRSYTLYNIGLIYGNNGNYSQALEYYHQALELNSNLPQALNNIAVIYH 111          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_EMIHU (Photosystem I assembly protein ycf3 OS=Emiliania huxleyi GN=ycf3 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.618e-24
Identity = 51/75 (68.00%), Postives = 66/75 (88.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQS G+YAEAL+NYYEA++LE DP+DRSYILYNIGLI+ +NG+++K+L+YY +AL+ N  LPQA NN+AVI H
Sbjct:   41 MSAQSSGDYAEALENYYEALKLEEDPFDRSYILYNIGLIYGNNGDYSKSLDYYHQALDLNSRLPQALNNIAVIYH 115          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CYAA5 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain ATCC 51142) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.419e-24
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ++G YAEAL NYYEA++LE D  DRSYILYNIG+IH SNGEH KAL+YY +A++ NP +P A NN+AVI H
Sbjct:   43 MSAQADGEYAEALDNYYEALKLEEDANDRSYILYNIGIIHASNGEHAKALDYYEQAVDLNPQMPSALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CYAP7 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC 7424) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 4.465e-24
Identity = 52/75 (69.33%), Postives = 60/75 (80.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ++G Y EAL NYYEA++LE D  DRSYILYNIG+IH SNGEH +ALEYY  A+E NP LP A NN+AVI H
Sbjct:   43 MSAQADGEYKEALDNYYEALKLEDDANDRSYILYNIGIIHGSNGEHERALEYYHEAIELNPNLPSALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CYAP8 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC 8801) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 9.947e-24
Identity = 50/75 (66.67%), Postives = 62/75 (82.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ++G YAEAL NYYEA++LE DP DRSYILYNIG+IH SNG+  KALEYY ++++ NP +P A NN+AVI H
Sbjct:   43 MSAQADGEYAEALDNYYEALKLEEDPNDRSYILYNIGIIHASNGDQEKALEYYNQSVDLNPRMPSALNNIAVIYH 117          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_PORYE2.797e-2676.00Photosystem I assembly protein ycf3 OS=Porphyra ye... [more]
YCF3_PORPU3.653e-2676.00Photosystem I assembly protein ycf3 OS=Porphyra pu... [more]
YCF3_GALSU3.653e-2674.67Photosystem I assembly protein ycf3 OS=Galdieria s... [more]
YCF3_THEEB1.813e-2573.33Photosystem I assembly protein ycf3 OS=Thermosynec... [more]
YCF3_MICAN5.275e-2570.67Photosystem I assembly protein ycf3 OS=Microcystis... [more]
YCF3_ODOSI6.889e-2572.00Photosystem I assembly protein ycf3 OS=Odontella s... [more]
YCF3_EMIHU2.618e-2468.00Photosystem I assembly protein ycf3 OS=Emiliania h... [more]
YCF3_CYAA53.419e-2468.00Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]
YCF3_CYAP74.465e-2469.33Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]
YCF3_CYAP89.947e-2466.67Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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