CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6352 contig Csv1_Contig6352:1478..1934. BLAST: Citrus Unigene V1 Contigs to TAIR9
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CUSRE (Photosystem I assembly protein ycf3 OS=Cuscuta reflexa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 1.430e-38
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = -1
Query:   51 RMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 278
            RMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   42 RMSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHMKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PLALA (Photosystem I assembly protein ycf3 OS=Plantago lanceolata GN=ycf3 PE=3 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.439e-38
Identity = 74/75 (98.67%), Postives = 75/75 (100.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLE+DPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEMDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_MORIN (Photosystem I assembly protein ycf3 OS=Morus indica GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.160e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CUCSA (Photosystem I assembly protein ycf3 OS=Cucumis sativus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 4.160e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT NGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   44 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTRNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 118          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_WHEAT (Photosystem I assembly protein ycf3 OS=Triticum aestivum GN=ycf3 PE=2 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SACHY (Photosystem I assembly protein ycf3 OS=Saccharum hybrid GN=ycf3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_RANMC (Photosystem I assembly protein ycf3 OS=Ranunculus macranthus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PIPCE (Photosystem I assembly protein ycf3 OS=Piper cenocladum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSJ (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. japonica GN=ycf3 PE=2 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ORYSI (Photosystem I assembly protein ycf3 OS=Oryza sativa subsp. indica GN=ycf3 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 5.433e-38
Identity = 74/75 (98.67%), Postives = 74/75 (98.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_CUSRE1.430e-3898.68Photosystem I assembly protein ycf3 OS=Cuscuta ref... [more]
YCF3_PLALA2.439e-3898.67Photosystem I assembly protein ycf3 OS=Plantago la... [more]
YCF3_MORIN4.160e-3898.67Photosystem I assembly protein ycf3 OS=Morus indic... [more]
YCF3_CUCSA4.160e-3898.67Photosystem I assembly protein ycf3 OS=Cucumis sat... [more]
YCF3_WHEAT5.433e-3898.67Photosystem I assembly protein ycf3 OS=Triticum ae... [more]
YCF3_SACHY5.433e-3898.67Photosystem I assembly protein ycf3 OS=Saccharum h... [more]
YCF3_RANMC5.433e-3898.67Photosystem I assembly protein ycf3 OS=Ranunculus ... [more]
YCF3_PIPCE5.433e-3898.67Photosystem I assembly protein ycf3 OS=Piper cenoc... [more]
YCF3_ORYSJ5.433e-3898.67Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]
YCF3_ORYSI5.433e-3898.67Photosystem I assembly protein ycf3 OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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