CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ORYNI (Photosystem I assembly protein ycf3 OS=Oryza nivara GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_LOLPR (Photosystem I assembly protein ycf3 OS=Lolium perenne GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_JASNU (Photosystem I assembly protein ycf3 OS=Jasminum nudiflorum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 73/75 (97.33%), Postives = 74/75 (98.67%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            +SAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERN FLPQAFNNMAVICH
Sbjct:   43 ISAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNSFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_HORVU (Photosystem I assembly protein ycf3 OS=Hordeum vulgare GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_AGRST (Photosystem I assembly protein ycf3 OS=Agrostis stolonifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 2.696e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            M AQSEGNYAEALQNYYEA RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MLAQSEGNYAEALQNYYEATRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PHAAO (Photosystem I assembly protein ycf3 OS=Phalaenopsis aphrodite subsp. formosana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_LIRTU (Photosystem I assembly protein ycf3 OS=Liriodendron tulipifera GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_LEMMI (Photosystem I assembly protein ycf3 OS=Lemna minor GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ILLOL (Photosystem I assembly protein ycf3 OS=Illicium oligandrum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
[Close]
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ACOCL (Photosystem I assembly protein ycf3 OS=Acorus calamus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 3.522e-37
Identity = 73/75 (97.33%), Postives = 73/75 (97.33%), Query Frame = -1 
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYYEA R EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYEATRPEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 117
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_ORYNI2.696e-3797.33Photosystem I assembly protein ycf3 OS=Oryza nivar... [more]
YCF3_LOLPR2.696e-3797.33Photosystem I assembly protein ycf3 OS=Lolium pere... [more]
YCF3_JASNU2.696e-3797.33Photosystem I assembly protein ycf3 OS=Jasminum nu... [more]
YCF3_HORVU2.696e-3797.33Photosystem I assembly protein ycf3 OS=Hordeum vul... [more]
YCF3_AGRST2.696e-3797.33Photosystem I assembly protein ycf3 OS=Agrostis st... [more]
YCF3_PHAAO3.522e-3797.33Photosystem I assembly protein ycf3 OS=Phalaenopsi... [more]
YCF3_LIRTU3.522e-3797.33Photosystem I assembly protein ycf3 OS=Liriodendro... [more]
YCF3_LEMMI3.522e-3797.33Photosystem I assembly protein ycf3 OS=Lemna minor... [more]
YCF3_ILLOL3.522e-3797.33Photosystem I assembly protein ycf3 OS=Illicium ol... [more]
YCF3_ACOCL3.522e-3797.33Photosystem I assembly protein ycf3 OS=Acorus cala... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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