CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CUSGR (Photosystem I assembly protein ycf3 OS=Cuscuta gronovii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.480e-35
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEGNYAEALQNYY+AM LE+DPYDRSYILYNIG+IHTSNGEH+KALEYY RA+ERNPFLPQAFNNMAVICH
Sbjct:   43 MSAQSEGNYAEALQNYYQAMHLEMDPYDRSYILYNIGIIHTSNGEHSKALEYYCRAIERNPFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CHAGL (Photosystem I assembly protein ycf3 OS=Chaetosphaeridium globosum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.480e-35
Identity = 70/75 (93.33%), Postives = 72/75 (96.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNG+HTKALEYY +ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGQHTKALEYYLQALERNPALPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CHAVU (Photosystem I assembly protein ycf3 OS=Chara vulgaris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.296e-35
Identity = 69/75 (92.00%), Postives = 72/75 (96.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQAFNN+AVICH
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNPSLPQAFNNVAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ZYGCR (Photosystem I assembly protein ycf3 OS=Zygnema circumcarinatum GN=ycf3 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 4.305e-35
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KA+EYY +ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKAIEYYLQALERNPSLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ANGEV (Photosystem I assembly protein ycf3 OS=Angiopteris evecta GN=ycf3 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 1.253e-34
Identity = 69/75 (92.00%), Postives = 71/75 (94.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYY+AMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYY +ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYKAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYSQALERNPSLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_STAPU (Photosystem I assembly protein ycf3 OS=Staurastrum punctulatum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 1.636e-34
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL NYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERNP LPQA NNMAVICH
Sbjct:   43 MSAQSEGEYAEALLNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHVKALEYYFQALERNPSLPQALNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_HUPLU (Photosystem I assembly protein ycf3 OS=Huperzia lucidula GN=ycf3 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEA QNYYEAMRLEIDPYDRSYIL+NIGLIHTSNGEH +ALEYYF+ALERNP LPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEASQNYYEAMRLEIDPYDRSYILHNIGLIHTSNGEHARALEYYFQALERNPSLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_GNEPA (Photosystem I assembly protein ycf3 OS=Gnetum parvifolium GN=ycf3 PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGL+HTSNGEH KALEYYF+ALERNP LPQA NN A+ICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLVHTSNGEHAKALEYYFQALERNPILPQALNNTALICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ANTFO (Photosystem I assembly protein ycf3 OS=Anthoceros formosae GN=ycf3 PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.136e-34
Identity = 69/75 (92.00%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYYF+ALERN  LPQA NNMAVICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHAKALEYYFQALERNSSLPQALNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PINTH (Photosystem I assembly protein ycf3 OS=Pinus thunbergii GN=ycf3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLE DPYDRSYILYNIGL+HTSNGEHTKALEYYF+ALERNP LPQA NN A+ICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICH 117          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_CUSGR1.480e-3590.67Photosystem I assembly protein ycf3 OS=Cuscuta gro... [more]
YCF3_CHAGL1.480e-3593.33Photosystem I assembly protein ycf3 OS=Chaetosphae... [more]
YCF3_CHAVU3.296e-3592.00Photosystem I assembly protein ycf3 OS=Chara vulga... [more]
YCF3_ZYGCR4.305e-3592.00Photosystem I assembly protein ycf3 OS=Zygnema cir... [more]
YCF3_ANGEV1.253e-3492.00Photosystem I assembly protein ycf3 OS=Angiopteris... [more]
YCF3_STAPU1.636e-3492.00Photosystem I assembly protein ycf3 OS=Staurastrum... [more]
YCF3_HUPLU2.136e-3490.67Photosystem I assembly protein ycf3 OS=Huperzia lu... [more]
YCF3_GNEPA2.136e-3489.33Photosystem I assembly protein ycf3 OS=Gnetum parv... [more]
YCF3_ANTFO2.136e-3492.00Photosystem I assembly protein ycf3 OS=Anthoceros ... [more]
YCF3_PINTH3.644e-3489.33Photosystem I assembly protein ycf3 OS=Pinus thunb... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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