CF834700

Overview
NameCF834700
Unique NameCF834700
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length461
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_PINKO (Photosystem I assembly protein ycf3 OS=Pinus koraiensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 67/75 (89.33%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLE DPYDRSYILYNIGL+HTSNGEHTKALEYYF+ALERNP LPQA NN A+ICH
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLETDPYDRSYILYNIGLVHTSNGEHTKALEYYFQALERNPSLPQALNNTALICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CYCTA (Photosystem I assembly protein ycf3 OS=Cycas taitungensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 3.644e-34
Identity = 68/75 (90.67%), Postives = 71/75 (94.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMR EIDPYDRSYILYNIGLIH SNGEHT+ALEYYF+AL+RNP LPQAFNNMAVICH
Sbjct:   44 MSAQSEGEYAEALQNYYEAMRPEIDPYDRSYILYNIGLIHMSNGEHTEALEYYFQALKRNPSLPQAFNNMAVICH 118          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_ADICA (Photosystem I assembly protein ycf3 OS=Adiantum capillus-veneris GN=ycf3 PE=2 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 1.172e-32
Identity = 66/75 (88.00%), Postives = 69/75 (92.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEAL +YY+AMRLEID YDRSYILYNIGLIHTSNG H KALEYYF+ALERN FLPQAFNNMAVICH
Sbjct:   43 MSAQSEGEYAEALGSYYKAMRLEIDSYDRSYILYNIGLIHTSNGNHAKALEYYFQALERNSFLPQAFNNMAVICH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_NEPOL (Photosystem I assembly protein ycf3 OS=Nephroselmis olivacea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.000e-32
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH KALEYY++ALERNP+LPQA NN+AVI H
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHAKALEYYYQALERNPYLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_MESVI (Photosystem I assembly protein ycf3 OS=Mesostigma viride GN=ycf3 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 2.000e-32
Identity = 65/75 (86.67%), Postives = 70/75 (93.33%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH KALEYY++A+ERNP LPQA NN+AVI H
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHGKALEYYYQAIERNPSLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_CHLAT (Photosystem I assembly protein ycf3 OS=Chlorokybus atmophyticus GN=ycf3 PE=3 SV=2)

HSP 1 Score: 135.191 bits (339), Expect = 1.296e-31
Identity = 63/75 (84.00%), Postives = 69/75 (92.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH KALEYY++A+ERNP LPQA NN+AVI H
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHAKALEYYYQAIERNPSLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_LEPTE (Photosystem I assembly protein ycf3 OS=Leptosira terrestris GN=ycf3 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.211e-31
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLE+D YDRSYI YNIGLIHTSNGEH +ALEYY++ALERNP LPQA NN+AVI H
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEVDAYDRSYIFYNIGLIHTSNGEHARALEYYYQALERNPSLPQALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_STIHE (Photosystem I assembly protein ycf3 OS=Stigeoclonium helveticum GN=ycf3 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.888e-31
Identity = 63/75 (84.00%), Postives = 68/75 (90.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQSEG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH +ALEYY++ALERNP LP A NN+AVI H
Sbjct:   43 MSAQSEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHARALEYYYQALERNPSLPSALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_SCEOB (Photosystem I assembly protein ycf3 OS=Scenedesmus obliquus GN=ycf3 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.097e-30
Identity = 62/75 (82.67%), Postives = 68/75 (90.67%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNYYEAMRLE+D YDRSYILYNIGLIHTSNGEH +ALEYY++ALERNP LP A NN+AVI H
Sbjct:   43 MSAQAEGEYAEALQNYYEAMRLEVDAYDRSYILYNIGLIHTSNGEHGRALEYYYQALERNPSLPSALNNIAVIYH 117          
BLAST of CF834700 vs. ExPASy Swiss-Prot
Match: YCF3_OSTTA (Photosystem I assembly protein ycf3 OS=Ostreococcus tauri GN=ycf3 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 1.097e-30
Identity = 61/75 (81.33%), Postives = 69/75 (92.00%), Query Frame = -1
Query:   51 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 275
            MSAQ+EG YAEALQNY +AMRLE+DPYDRS+I YNIGLIHTSNGEHTKALEYY++AL+RNP LPQA NN+AVI H
Sbjct:   43 MSAQAEGEYAEALQNYAQAMRLEVDPYDRSFIFYNIGLIHTSNGEHTKALEYYYQALDRNPSLPQALNNIAVIYH 117          
The following BLAST results are available for this feature:
BLAST of CF834700 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_PINKO3.644e-3489.33Photosystem I assembly protein ycf3 OS=Pinus korai... [more]
YCF3_CYCTA3.644e-3490.67Photosystem I assembly protein ycf3 OS=Cycas taitu... [more]
YCF3_ADICA1.172e-3288.00Photosystem I assembly protein ycf3 OS=Adiantum ca... [more]
YCF3_NEPOL2.000e-3285.33Photosystem I assembly protein ycf3 OS=Nephroselmi... [more]
YCF3_MESVI2.000e-3286.67Photosystem I assembly protein ycf3 OS=Mesostigma ... [more]
YCF3_CHLAT1.296e-3184.00Photosystem I assembly protein ycf3 OS=Chlorokybus... [more]
YCF3_LEPTE2.211e-3184.00Photosystem I assembly protein ycf3 OS=Leptosira t... [more]
YCF3_STIHE2.888e-3184.00Photosystem I assembly protein ycf3 OS=Stigeocloni... [more]
YCF3_SCEOB1.097e-3082.67Photosystem I assembly protein ycf3 OS=Scenedesmus... [more]
YCF3_OSTTA1.097e-3081.33Photosystem I assembly protein ycf3 OS=Ostreococcu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834700 ID=CF834700; Name=CF834700; organism=Citrus sinensis; type=EST; length=461bp
TTTTTTTTTTTTTTACTTTTTTCTTTCTATAGTAGAGATAGTCCCCCTTA
ATGACAGATCACAGCCATATTATTAAAAGCTTGTGGTAAGAACGGATTTC
GTTCTAGTGCCCGAAAATAATATTCTAAAGCTTTTGTATGTTCTCCGTTA
CTTGTGTGGATAAGGCCTATGTTATAGAGTATATAGCTTCGATCGTAAGG
ATCAATTTCTAGTCGCATAGCTTCATAATAATTCTGTAAAGCTTCCGCAT
AATTGCCTTCAGATTGAGCTGACATCCGTTACGGTCGTCATTCGATTCAA
AGAATTCTCCGTTTCAAAACCGTACATGAGATGAAAATCTCATACGGCTC
CTCCTTTATGTGCATTATGAGAATAATCCATGAAATCAAAAAAGATTGAA
ATATTCTCATTATGAACTAAGTGGGGCTAATGTTTTTACAAGAAATCTCT
AGCCAACCTTC
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