CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_PORPU (Photosystem I assembly protein ycf3 OS=Porphyra purpurea GN=ycf3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.758e-27
Identity = 58/76 (76.32%), Postives = 65/76 (85.53%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL+NYYEA++LE DPYDRSYILYNIGLI+ SNGE+ KALEYY + LE N  LPQA NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALENYYEALKLEEDPYDRSYILYNIGLIYASNGEYIKALEYYHQGLELNFKLPQALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_GALSU (Photosystem I assembly protein ycf3 OS=Galdieria sulphuraria GN=ycf3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.758e-27
Identity = 57/76 (75.00%), Postives = 64/76 (84.21%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQSEG YAEAL NYYEA+ LE DPYD+S+ILYNIGLIH SNGE+ KAL+YY +ALE N  LPQA NN+AVI HY
Sbjct:   43 MSAQSEGEYAEALANYYEALNLEEDPYDKSFILYNIGLIHASNGEYVKALDYYHKALEANNKLPQALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CYAPA (Photosystem I assembly protein ycf3 OS=Cyanophora paradoxa GN=ycf3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 5.758e-27
Identity = 57/75 (76.00%), Postives = 64/75 (85.33%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 412
            MSAQSEG YAEAL+NYYEA+RLE DPYD+SY  YNI LIHTSNG+ TKALEYY +AL+ NP +PQA NNMAVI H
Sbjct:   43 MSAQSEGAYAEALENYYEALRLEEDPYDKSYTFYNIALIHTSNGDQTKALEYYRQALDLNPKMPQALNNMAVIYH 117          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_THEEB (Photosystem I assembly protein ycf3 OS=Thermosynechococcus elongatus (strain BP-1) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 2.188e-26
Identity = 56/77 (72.73%), Postives = 64/77 (83.12%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 418
            MSAQ++G YAEAL+NY  A+ LE DP DRSYILYNIGLIH SNGEH KALEYY +ALE NP +PQA NN+AVI HY+
Sbjct:   43 MSAQADGEYAEALENYQAALELEEDPTDRSYILYNIGLIHASNGEHEKALEYYHQALELNPRMPQALNNIAVIYHYL 119          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_MICAN (Photosystem I assembly protein ycf3 OS=Microcystis aeruginosa (strain NIES-843) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.419e-25
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G YAEAL NYYEA+ LE DP DRSYILYNIG+IH SNGEH KALEYY  A++ NP +P A NN+AVI H+
Sbjct:   43 MSAQADGEYAEALDNYYEALTLEEDPNDRSYILYNIGIIHASNGEHEKALEYYEEAIQLNPRMPSALNNIAVIYHF 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_EMIHU (Photosystem I assembly protein ycf3 OS=Emiliania huxleyi GN=ycf3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 4.126e-25
Identity = 52/76 (68.42%), Postives = 67/76 (88.16%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQS G+YAEAL+NYYEA++LE DP+DRSYILYNIGLI+ +NG+++K+L+YY +AL+ N  LPQA NN+AVI HY
Sbjct:   41 MSAQSSGDYAEALENYYEALKLEEDPFDRSYILYNIGLIYGNNGDYSKSLDYYHQALDLNSRLPQALNNIAVIYHY 116          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CYAA5 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain ATCC 51142) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 5.389e-25
Identity = 52/76 (68.42%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G YAEAL NYYEA++LE D  DRSYILYNIG+IH SNGEH KAL+YY +A++ NP +P A NN+AVI HY
Sbjct:   43 MSAQADGEYAEALDNYYEALKLEEDANDRSYILYNIGIIHASNGEHAKALDYYEQAVDLNPQMPSALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ODOSI (Photosystem I assembly protein ycf3 OS=Odontella sinensis GN=ycf3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 54/75 (72.00%), Postives = 64/75 (85.33%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 412
            MSAQSEG YAEAL+NYYEA++LE DPYDRSY LYNIGLI+ +NG +++ALEYY +ALE N  LPQA NN+AVI H
Sbjct:   37 MSAQSEGKYAEALENYYEALQLEEDPYDRSYTLYNIGLIYGNNGNYSQALEYYHQALELNSNLPQALNNIAVIYH 111          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CYAP7 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC 7424) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 7.038e-25
Identity = 53/76 (69.74%), Postives = 61/76 (80.26%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G Y EAL NYYEA++LE D  DRSYILYNIG+IH SNGEH +ALEYY  A+E NP LP A NN+AVI HY
Sbjct:   43 MSAQADGEYKEALDNYYEALKLEDDANDRSYILYNIGIIHGSNGEHERALEYYHEAIELNPNLPSALNNIAVIYHY 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CYAP8 (Photosystem I assembly protein ycf3 OS=Cyanothece sp. (strain PCC 8801) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.568e-24
Identity = 51/76 (67.11%), Postives = 63/76 (82.89%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G YAEAL NYYEA++LE DP DRSYILYNIG+IH SNG+  KALEYY ++++ NP +P A NN+AVI HY
Sbjct:   43 MSAQADGEYAEALDNYYEALKLEEDPNDRSYILYNIGIIHASNGDQEKALEYYNQSVDLNPRMPSALNNIAVIYHY 118          
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_PORPU5.758e-2776.32Photosystem I assembly protein ycf3 OS=Porphyra pu... [more]
YCF3_GALSU5.758e-2775.00Photosystem I assembly protein ycf3 OS=Galdieria s... [more]
YCF3_CYAPA5.758e-2776.00Photosystem I assembly protein ycf3 OS=Cyanophora ... [more]
YCF3_THEEB2.188e-2672.73Photosystem I assembly protein ycf3 OS=Thermosynec... [more]
YCF3_MICAN2.419e-2569.74Photosystem I assembly protein ycf3 OS=Microcystis... [more]
YCF3_EMIHU4.126e-2568.42Photosystem I assembly protein ycf3 OS=Emiliania h... [more]
YCF3_CYAA55.389e-2568.42Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]
YCF3_ODOSI7.038e-2572.00Photosystem I assembly protein ycf3 OS=Odontella s... [more]
YCF3_CYAP77.038e-2569.74Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]
YCF3_CYAP81.568e-2467.11Photosystem I assembly protein ycf3 OS=Cyanothece ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
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