CF834701

Overview
NameCF834701
Unique NameCF834701
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length464
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNY3 (Photosystem I assembly protein ycf3 OS=Synechocystis sp. (strain PCC 6803) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.284e-22
Identity = 49/76 (64.47%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            MSAQ++G YAEAL NY EA+RLE +P DRSYILYN+ LIH SNG+H KAL  Y  A+E NP +P A NN+AVI H+
Sbjct:   43 MSAQADGEYAEALDNYEEALRLEENPNDRSYILYNMALIHASNGDHEKALGLYQEAIELNPKMPSALNNIAVIYHF 118          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNJA (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain JA-3-3Ab) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.623e-21
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M+AQSEG YAEAL+NY EA+ LE D  DRSYILYN+GLI+ SNGE  KALEYY +ALE NP L  A NN+AV+ H+
Sbjct:   44 MAAQSEGEYAEALENYREALALEQDDEDRSYILYNMGLIYQSNGELDKALEYYHQALELNPRLCSALNNIAVLLHH 119          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNR3 (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain RCC307) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.615e-21
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHYV 418
            MSAQ +G YAEAL+NY EA+RLE DP DR++ILYN+ L++ SNGEH +ALE Y +AL  N  +PQ  NNMAVI H++
Sbjct:   43 MSAQGDGEYAEALENYQEALRLEEDPNDRAFILYNMALVYASNGEHNRALEQYEQALALNAKMPQVLNNMAVIHHHL 119          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_CYAME (Photosystem I assembly protein ycf3 OS=Cyanidioschyzon merolae GN=ycf3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.166e-21
Identity = 48/75 (64.00%), Postives = 59/75 (78.67%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 412
            M+AQ+EG YA+AL++YY A+  E D  DRSYI+YNIGLI+ SNGE  +ALEYY +ALE NP L QA NN+AVI H
Sbjct:   43 MAAQAEGEYAQALESYYHALEFEEDVIDRSYIIYNIGLIYASNGEDEQALEYYHQALELNPRLVQALNNIAVIYH 117          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_ACAM1 (Photosystem I assembly protein ycf3 OS=Acaryochloris marina (strain MBIC 11017) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 6.166e-21
Identity = 47/76 (61.84%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M+AQ +GNYA+AL NY EA+ LE DP+D+SYILYN+GLI  +NG+H KAL+YY ++LE NP L QA  N  VI HY
Sbjct:   39 MAAQVDGNYAKALGNYTEALALEEDPFDKSYILYNMGLIFANNGDHEKALDYYHQSLELNPNLVQALYNTGVILHY 114          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNJB (Photosystem I assembly protein ycf3 OS=Synechococcus sp. GN=ycf3 PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.052e-20
Identity = 50/76 (65.79%), Postives = 59/76 (77.63%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICHY 415
            M+AQSEG YAEAL+NY EA+ LE    DRSYILYN+GLI+ SNGE  KALEYY +ALE NP L  A NN+AV+ H+
Sbjct:   44 MAAQSEGEYAEALENYREALALEQGEEDRSYILYNMGLIYQSNGELDKALEYYHQALELNPRLCSALNNIAVLLHH 119          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_THAPS (Photosystem I assembly protein ycf3 OS=Thalassiosira pseudonana GN=ycf3 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 5.220e-20
Identity = 45/75 (60.00%), Postives = 58/75 (77.33%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVICH 412
            M+AQ+EG+YAEAL+NYYE++ L+ D YDRSY LYNIGLI+  N  + +ALEYY +A+  N  LPQA NN+A I H
Sbjct:   39 MAAQAEGDYAEALENYYESLYLDEDQYDRSYTLYNIGLIYAKNENYPRALEYYHQAVSLNSNLPQALNNIAAIYH 113          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNS9 (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain CC9902) GN=ycf3 PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 6.603e-15
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 406
            +SAQ++G+YAEAL+NY EA++LE DP DR   L N+ +I+ SNGE  +A+E Y +AL+ NP  P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYDEALKLETDPTDRGETLKNMAIIYMSNGEEERAIETYQKALDENPKQPSCLKNMGLI 115          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNSC (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain CC9605) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 4.280e-14
Identity = 37/73 (50.68%), Postives = 52/73 (71.23%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 406
            +SAQ++G+YAEAL+NY EA++LE +  DRS  L N+ +I+ SNGE  +A+E Y +ALE NP  P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYEEALKLEENSTDRSETLKNMAIIYMSNGEEERAIETYRKALEENPNQPSCLKNMGLI 115          
BLAST of CF834701 vs. ExPASy Swiss-Prot
Match: YCF3_SYNS3 (Photosystem I assembly protein ycf3 OS=Synechococcus sp. (strain CC9311) GN=ycf3 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 36/73 (49.32%), Postives = 51/73 (69.86%), Query Frame = 2
Query:  188 MSAQSEGNYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFRALERNPFLPQAFNNMAVI 406
            +SAQ++G+YAEAL+NY E+++LE +  DR   L NI +I+ SNGE  +ALE Y +AL+ NP  P    NM +I
Sbjct:   43 LSAQNDGDYAEALENYEESLKLEENAIDRGETLKNIAIIYMSNGEEERALETYQKALDENPKQPSCLKNMGLI 115          
The following BLAST results are available for this feature:
BLAST of CF834701 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 136
Match NameE-valueIdentityDescription
YCF3_SYNY37.284e-2264.47Photosystem I assembly protein ycf3 OS=Synechocyst... [more]
YCF3_SYNJA1.623e-2167.11Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_SYNR33.615e-2161.04Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_CYAME6.166e-2164.00Photosystem I assembly protein ycf3 OS=Cyanidiosch... [more]
YCF3_ACAM16.166e-2161.84Photosystem I assembly protein ycf3 OS=Acaryochlor... [more]
YCF3_SYNJB1.052e-2065.79Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_THAPS5.220e-2060.00Photosystem I assembly protein ycf3 OS=Thalassiosi... [more]
YCF3_SYNS96.603e-1550.68Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_SYNSC4.280e-1450.68Photosystem I assembly protein ycf3 OS=Synechococc... [more]
YCF3_SYNS31.245e-1349.32Photosystem I assembly protein ycf3 OS=Synechococc... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_05P19_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa05P19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834701 ID=CF834701; Name=CF834701; organism=Citrus sinensis; type=EST; length=464bp
GGAAGGTTGGCCATTTATTTCTTGTAAAAACATTAGCCCCACTTAGTTCA
TACTGAGAATATTTCAATCTTTTTTGATTTCATGGATTATTCTCATAATG
CACATAAAGGAGGAGCCGTATGAGATTTTCATCTCATGTACGGTTTTGAA
ACGGAGAATTCTTTGAATCGAATGACGACCGTAACGGATGTCAGCTCAAT
CTGAAGGCAATTATGCGGAAGCTTTACAGAATTATTATGAAGCTATGCGA
CTAGAAATTGATCCTTACGATCGAAGCTATATACTCTATAACATAGGCCT
TATCCACACAAGTAACGGAGAACATACAAAAGCTTTAGAATATTATTTTC
GGGCACTAGAACGAAATCCGTTCTTACCACAAGCTTTTAATAATATGGCT
GTGATCTGTCATTACGTGCGACTATCTCTACTATAGAAAGAAAAAAGTAA
AAAAAAAAAAAAAA
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