CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL8_CAEEL (60S ribosomal protein L8 OS=Caenorhabditis elegans GN=rpl-8 PE=1 SV=1)

HSP 1 Score: 312.383 bits (799), Expect = 1.337e-84
Identity = 139/213 (65.26%), Postives = 175/213 (82.16%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGR IR QRKGAG +FKSH  HRKG ++ R LD+ ER+GY+KG+V +IIHDPGRGAPLA + FR P++Y   K   +AAEGM+TGQF++CG KA + +GN++PV ++PEG  +CNVE+  GDRGV+ARASG+YA +I+HNPD   TR++LPSGAKK++ S  RAMIG VAGGGRT+KPLLKAG +YHK++ KRN WP+VRGVAMNPVEHPHGG
Sbjct:    1 MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYATVIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNSWPRVRGVAMNPVEHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 311.997 bits (798), Expect = 1.746e-84
Identity = 143/213 (67.14%), Postives = 178/213 (83.57%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKKII S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SCHPO (60S ribosomal protein L2 OS=Schizosaccharomyces pombe GN=rpl2a PE=2 SV=2)

HSP 1 Score: 311.227 bits (796), Expect = 2.979e-84
Identity = 142/213 (66.67%), Postives = 172/213 (80.75%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIRAQRK +G +F++HT  RKG AQ R+LDF ER+GY++GVV +IIHDPGRGAPLA+V FR+P+ Y    E F+A EGMYTGQFVYCGK A L VGNVLPV  +PEG ++ NVE   GDRG L R+SG+Y +I+ H+ D   TRVKLPSGAKK++PS  R ++G VAGGGR +KPLLKAG A+HK+RVKRNCWP+ RGVAMNPV+HPHGG
Sbjct:    1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKVAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGG 212          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 310.457 bits (794), Expect = 5.081e-84
Identity = 141/213 (66.20%), Postives = 177/213 (83.10%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++G+V +I+HD GRGAPLA+V FR P++Y  ++E+FIA EG++TGQF+Y GKKA+L VGNVLP+ S+PEG +V NVE   GDRG LARASG+Y +II HNPD + TRV+LPSGAKK+I S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGIVKQIVHDSGRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIYAGKKASLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 305.449 bits (781), Expect = 1.635e-82
Identity = 137/213 (64.32%), Postives = 174/213 (81.69%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MGRVIR QRKGAGS+F SHT  R+G A+ R+LD+ ER+GY++GVV +I+HD GRGAPLA+V FR P++Y  ++E FIA EG++TGQF+Y GK A+L VGN+LP+ S+PEG +V NVE   GDRG LAR SG+Y ++I HNPD + TR++LPSGAKKI+ S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGG
Sbjct:    1 MGRVIRNQRKGAGSIFTSHTRLRQGAAKLRTLDYAERHGYIRGVVKQIVHDAGRGAPLAKVVFRDPYKYKLREETFIANEGVHTGQFIYAGKNASLNVGNILPLGSVPEGTIVSNVEERPGDRGALARTSGNYVIVIGHNPDENKTRIRLPSGAKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGG 213          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METM5 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.382e-49
Identity = 102/214 (47.66%), Postives = 136/214 (63.55%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GG
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGG 207          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METMP (50S ribosomal protein L2P OS=Methanococcus maripaludis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 6.932e-49
Identity = 101/214 (47.20%), Postives = 136/214 (63.55%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA +ISH  D   T V+LPSG  K++   CRA +G VAGGGR EKP +KAG  YH    K   WPKVRGVAMN V+HP+GG
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVIDILHDPGRSAPVAKVKFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVISH--DVGKTIVRLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKYHSLSAKAVAWPKVRGVAMNAVDHPYGG 207          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METM7 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.182e-48
Identity = 100/214 (46.73%), Postives = 136/214 (63.55%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ + +Q +G G+  ++S TH RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GG
Sbjct:    1 MGKRLISQNRGRGTPKYRSPTHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGG 207          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_METM6 (50S ribosomal protein L2P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.440e-48
Identity = 99/214 (46.26%), Postives = 136/214 (63.55%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGSV-FKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ + +Q +G G+  ++S +H RKG  ++RS D  E++G + G V +I+HDPGR AP+A+V F +      ++ L +  EG+  G+ + CG  A +  GNVLP+  IPEG  V N+E   GD G L R+ G YA ++SH  D   T VKLPSG  K++   CRA +G VAGGGR EKP +KAG  +H    K   WPKVRGVAMN V+HP+GG
Sbjct:    1 MGKRLISQNRGRGTPKYRSPSHKRKGAVKYRSYDEMEKDGKILGTVVDILHDPGRSAPVAKVRFAND-----EERLVLIPEGIQVGEEIECGISAEIKPGNVLPLGEIPEGIPVYNIETIPGDGGKLVRSGGCYAHVVSH--DVGKTIVKLPSGFSKVLNPACRATVGVVAGGGRKEKPFVKAGKKHHSLSAKAIAWPKVRGVAMNAVDHPYGG 207          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.664e-48
Identity = 100/214 (46.73%), Postives = 131/214 (61.21%), Query Frame = 3
Query:   18 MGRVIRAQRKGAGS-VFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            MG+ I  QR G G+  F+S +H R GPA++  L        +KG + +++HDPGR  PLA++       ++       A EGMY GQ +  G  A +  GN+LP+  IPEG  + N+E   GD G   R+SG YA+I+        T+V+LPSG    +P+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGG
Sbjct:    1 MGKRILPQRMGRGTPTFRSPSHRRVGPAKYPPLKLDRT---IKGKIIDLLHDPGRWVPLAKIVLEDGTTFLTP-----AVEGMYVGQIIEIGPDAHISNGNILPIGKIPEGTQIANIEKRPGDGGKFVRSSGTYALIVGRA--GTKTQVQLPSGKIIEVPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGG 204          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL8_CAEEL1.337e-8465.2660S ribosomal protein L8 OS=Caenorhabditis elegans... [more]
RL2_CANGA1.746e-8467.1460S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_SCHPO2.979e-8466.6760S ribosomal protein L2 OS=Schizosaccharomyces po... [more]
RL2_YEAST5.081e-8466.2060S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO1.635e-8264.3260S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_METM52.382e-4947.6650S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METMP6.932e-4947.2050S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM71.182e-4846.7350S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_METM63.440e-4846.2650S ribosomal protein L2P OS=Methanococcus maripal... [more]
RL2_STAMF7.664e-4846.7350S ribosomal protein L2P OS=Staphylothermus marin... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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