CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LEPBP (50S ribosomal protein L2 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRH-PFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            +FR +DF      +   V  I +DP R A +A V +    +RY+      +A  G+  G  +  G  A + +GN LP+  IP G  V N+E H+G  G +AR +G +AVI +   D D   +KLPS   + +   C A IG+++        + KAG         RN W    PKVRGV MNPV+HP GG
Sbjct:   61 KFRIIDFKRNKFGIPATVKTIEYDPNRSAFIALVCYADGEYRYI------LAPNGLKVGDKIESGPAAEIKLGNTLPLDKIPAGTNVHNIELHIGKGGQIARTAGSFAVISA--KDGDYVSLKLPSSEIRKVRKECLATIGELSNKDHNLVIIGKAG---------RNRWLGKRPKVRGVVMNPVDHPLGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_LEPBA (50S ribosomal protein L2 OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 68/191 (35.60%), Postives = 96/191 (50.26%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRH-PFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            +FR +DF      +   V  I +DP R A +A V +    +RY+      +A  G+  G  +  G  A + +GN LP+  IP G  V N+E H+G  G +AR +G +AVI +   D D   +KLPS   + +   C A IG+++        + KAG         RN W    PKVRGV MNPV+HP GG
Sbjct:   61 KFRIIDFKRNKFGIPATVKTIEYDPNRSAFIALVCYADGEYRYI------LAPNGLKVGDKIESGPAAEIKLGNTLPLDKIPAGTNVHNIELHIGKGGQIARTAGSFAVISA--KDGDYVSLKLPSSEIRKVRKECLATIGELSNKDHNLVIIGKAG---------RNRWLGKRPKVRGVVMNPVDHPLGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_GEOSM (50S ribosomal protein L2 OS=Geobacter sp. (strain M21) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 65/190 (34.21%), Postives = 98/190 (51.58%), Query Frame = 3
Query:   99 QFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++R +DF      +   VA I +DP R A +A + +        +K   +A   +  G  V   ++A +  GN LP+R IP G ++ N+E  +G    LAR++G +A +++   +    +VKLPSG  ++I   C+A IGQV         + KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   61 KYRIIDFRRDKTEIPAKVATIEYDPCRSARIALLNYADG-----EKRYILAPLSLKVGDTVISSEQADIKPGNALPIRCIPLGTIIHNIELKIGKGAQLARSAGTFAQLMA--KEGKYGQVKLPSGEVRMILMDCKATIGQVGNVDHENVSIGKAG---------RSRWLGVRPHVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CUPTR (50S ribosomal protein L2 OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 72/211 (34.12%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF   +++G +   V  + +DP R A +A V F        ++   IA +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA +G+V     + + + KAG         R   P VRGV MNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IPAKVERLEYDPNRSANIALVVFADG-----ERRYIIATKGMVAGQQLLNGSEAPIKAGNNLPIRNIPVGTTINNVEMLPGKGAQIARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATVGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BACSU (50S ribosomal protein L2 OS=Bacillus subtilis GN=rplB PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   39 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++ G  +  K    H+ G    Q+R +DF      + G VA + +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGG
Sbjct:   39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYADG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ACIC5 (50S ribosomal protein L2 OS=Acidobacterium capsulatum (strain ATCC 51196 / DSM 11244 / JCM 7670) GN=rplB PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 67/198 (33.84%), Postives = 98/198 (49.49%), Query Frame = 3
Query:   78 HHRKG-PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            HH  G   + R +DF      + G VA I +DP R + +A +++        +K   +   G+  GQ +  G +A ++VGN LP+++IP G  V NVE   G    + R++G  A +++   + D   +KLPSG  + +   C A IGQV         + KAG         RN W    P  RGV MNPV+HPHGG
Sbjct:   53 HHGGGHKKKLRLIDFKRDKFGVPGRVATIEYDPNRSSRIALISYADG-----EKRYILQPVGLKVGQTIMSGPEADILVGNALPLKNIPAGTTVHNVELRPGKGAQMVRSAGASAQLVA--KEGDYALLKLPSGETRRVLINCMATIGQVGNTDHENVSIGKAG---------RNRWKGIRPTNRGVTMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PROWI (50S ribosomal protein L2, plastid OS=Prototheca wickerhamii GN=rpl2 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.745e-21
Identity = 69/209 (33.01%), Postives = 106/209 (50.72%), Query Frame = 3
Query:   36 AQRKGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            ++ +G  +  +  T HR G  +  +R +DF         +V  I +DP R A +A V ++       +K   ++  G+  G+ V     A + VGN LP+ +IP G  V NVE   G  G L R++G  A I++   +     + LPSG  ++IP  C A +G+V     +   L KAG +  ++  +R   P VRG AMNPV+HPHGG
Sbjct:   38 SRAQGRNNKGRITTRHRGGGHKRLYREIDFIRNKIGTSAIVKSIEYDPNRTARIALVCYKDG-----EKRYILSPTGLKVGEMVIASPNAPITVGNTLPLYNIPLGTSVHNVELQPGAGGQLVRSAGSVAQIVA--KEGQWATLHLPSGEYRLIPQKCWATVGRVGNLDNSNITLGKAGRS--RWLSQR---PHVRGSAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_STAS1 (50S ribosomal protein L2 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 71/212 (33.49%), Postives = 104/212 (49.06%), Query Frame = 3
Query:   33 RAQRKGAGSVFKSHTHHRKGPAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            RA R   G +   H H      Q+R +DF      +   V  I +DP R A +A + +        +K   IA + +  GQ +  G++A + VGN LP++ IP G V+ N+E   G  G +AR++G  A ++    +     ++L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGG
Sbjct:   40 RAGRNNQGKLTVRH-HGGGHKRQYRVIDFKRNKDGINAKVDSIQYDPNRSANIALLVYADG-----EKRYIIAPKNLKVGQVLESGEEADIKVGNALPLQFIPVGTVIHNIELKPGKGGQIARSAGASAQVL--GKEGKYVLIRLRSGEVRMILSTCRATIGQV---GNIQHELVNVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SOLUE (50S ribosomal protein L2 OS=Solibacter usitatus (strain Ellin6076) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 60/185 (32.43%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +  VVA I +DP R + +A + +        +K   +  +G+  G  +  G  A +++GN LP+++IP G +V N+E   G  G +AR++G  A ++S   +     +KLPSG  + +   C A +GQV         L KAG      +   N     RGV+MNPV+HPHGG
Sbjct:   62 YRVVDFKRDKAGIPAVVAAIEYDPNRSSRIALLNYVDG-----EKRYILQPDGLKVGMKIMSGPNADILIGNALPLKNIPAGTIVHNIELKPGKGGQMARSAGSQAQLVSR--EGGLALLKLPSGEIRRVAVECMATVGQVGNVDHENVSLGKAGRKRWMGKTPHN-----RGVSMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RICAH (50S ribosomal protein L2 OS=Rickettsia akari (strain Hartford) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 67/198 (33.84%), Postives = 100/198 (50.51%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      +  VV  I +DP R A +A + +        +    +A + +  G  V   + A + +GN LP++ IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C+A IG ++   R    L KAG         RN W    P VRGVAMNPV+HPHGG
Sbjct:   53 HRGGGHKKLYRIIDFKRNKIDISAVVERIEYDPNRTAFIALIKYEDG-----EYSYILAPQKLSVGDRVMSSQDADIKIGNCLPLKFIPVGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLRSGEFRLVPLDCKATIGSISNPDRKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_LEPBP2.745e-2135.6050S ribosomal protein L2 OS=Leptospira biflexa ser... [more]
RL2_LEPBA2.745e-2135.6050S ribosomal protein L2 OS=Leptospira biflexa ser... [more]
RL2_GEOSM2.745e-2134.2150S ribosomal protein L2 OS=Geobacter sp. (strain ... [more]
RL2_CUPTR2.745e-2134.1250S ribosomal protein L2 OS=Cupriavidus taiwanensi... [more]
RL2_BACSU2.745e-2133.4950S ribosomal protein L2 OS=Bacillus subtilis GN=r... [more]
RL2_ACIC52.745e-2133.8450S ribosomal protein L2 OS=Acidobacterium capsula... [more]
RK2_PROWI2.745e-2133.0150S ribosomal protein L2, plastid OS=Prototheca wi... [more]
RL2_STAS13.585e-2133.4950S ribosomal protein L2 OS=Staphylococcus saproph... [more]
RL2_SOLUE3.585e-2132.4350S ribosomal protein L2 OS=Solibacter usitatus (s... [more]
RL2_RICAH3.585e-2133.8450S ribosomal protein L2 OS=Rickettsia akari (stra... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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