CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RALME (50S ribosomal protein L2 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 73/211 (34.60%), Postives = 107/211 (50.71%), Query Frame = 3
Query:   30 IRAQRKGAGSVFKSHTHHRKGPAQFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            I  + KG G     H HH      +R +DF   +++G +   V  + +DP R A +A V F        ++   IA +GM  GQ +  G +A +  GN LP+R+IP G  + NVE   G    +ARA+G  AV+++   +    +V+L SG  + +   CRA IG+V     + + + KAG         R   P VRGV MNPV+HPHGG
Sbjct:   49 ITTRHKGGG-----HKHH------YRVVDFKRNDKDG-IAAKVERLEYDPNRSANIALVLFADG-----ERRYIIATKGMVAGQALMNGSEAPIKAGNNLPIRNIPVGTTINNVEILPGKGAQVARAAGGSAVLLAR--EGLYAQVRLRSGEVRRVHIECRATIGEVGNEEHSLRVIGKAGATRW-----RGIRPTVRGVVMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_MACCJ (50S ribosomal protein L2 OS=Macrococcus caseolyticus (strain JCSC5402) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 73/212 (34.43%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   39 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++ G  +  K    HR G    Q+R +DF      +   VA I +DP R A +A + +        +K   IA +G+  G  V  G +A + VGN LP+++IP G V+ N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGG
Sbjct:   39 RKAGRNNQGKLTVRHRGGGHKRQYRIIDFKRNKDGIPAKVATIEYDPNRSANIALLHYLDG-----EKRYIIAPKGLTVGTQVVNGPEADIKVGNCLPLQNIPVGTVIHNIELKPGKGGQLVRSAGASAQVL--GKEGKYVLVRLKSGEVRMILSTCRATIGQV---GNEQHELINIGKA------GRSRWKGIRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_EHRCJ (50S ribosomal protein L2 OS=Ehrlichia canis (strain Jake) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 68/189 (35.98%), Postives = 98/189 (51.85%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            +R +DF      +   V  + +DP R A +A +++        +K   IA  G+  G  V  G+ + ++ GN L ++SIP G  V NVE   G+ GV+AR++G YA ++S   D     ++L SG  + + S CRA IG V+        L KAG         RN W    P VRGVAMNP++HPHGG
Sbjct:   62 YRIIDFKRNKVGVSATVERLEYDPNRTAFIALLSYDDG-----EKSYIIAPNGLKKGDVVISGEGSDILPGNCLMLKSIPVGTFVHNVELRPGNGGVIARSAGTYAQLMS--KDGVYVLLRLSSGEIRKVLSDCRATIGIVSNLDNQNVKLGKAG---------RNRWLGIRPTVRGVAMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_DESRM (50S ribosomal protein L2 OS=Desulfotomaculum reducens (strain MI-1) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 63/185 (34.05%), Postives = 93/185 (50.27%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            FR +DF      +   VA I +DP R A +A + +        +K   +A  G+  G  V  G  A + VGN LP+R+IP G +V N+E + G    + R++G  A +++   +     ++LPSG  +++   CRA IGQV         + KAG + H         P VRG  MNPV+HPHGG
Sbjct:   62 FRIIDFKRNKDGIPAKVASIEYDPNRSARIALLNYADG-----EKRYILAPVGLEVGVIVESGPDADIKVGNCLPLRNIPVGTMVHNIELYPGAGAQMVRSAGAAAQLMA--KEGKYANLRLPSGEMRLVLQECRATIGQVGNLEHENVTIGKAGRSRH-----LGIRPTVRGKVMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BACLD (50S ribosomal protein L2 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   39 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++ G  +  K    H+ G    Q+R +DF      + G VA + +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGG
Sbjct:   39 KKGGRNNQGKLTVRHQGGGHKRQYRIIDFKRDKDGIPGRVATVEYDPNRSANIALINYVDG-----EKRYILAPKGLQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRATIGQV---GNEQHELINIGKA------GRSRWKGVRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_BACA2 (50S ribosomal protein L2 OS=Bacillus amyloliquefaciens (strain FZB42) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 71/212 (33.49%), Postives = 105/212 (49.53%), Query Frame = 3
Query:   39 QRKGAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++ G  +  K    H+ G    Q+R +DF      + G VA + +DP R A +A + +        +K   +A +G+  G  +  G +A + VGN LP+ +IP G VV N+E   G  G L R++G  A ++    +     V+L SG  ++I S CRA IGQV   G  +  L+  G A       R+ W    P VRG  MNP +HPHGG
Sbjct:   39 KKGGRNNQGKLTVRHQGGGHKRQYRVIDFKRDKDGIPGRVATVEYDPNRSANIALINYVDG-----EKRYILAPKGIQVGTEIMSGPEADIKVGNALPLINIPVGTVVHNIELKPGKGGQLVRSAGTSAQVL--GKEGKYVLVRLNSGEVRMILSACRASIGQV---GNEQHELINVGKA------GRSRWKGIRPTVRGSVMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_ALKMQ (50S ribosomal protein L2 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 66/199 (33.17%), Postives = 102/199 (51.26%), Query Frame = 3
Query:   66 KSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            K    HR G  +  +R +DF      +   VA + +DP R A +A + +        +K   IA +G+  G+ ++ G ++ + VGN LP+ +IP G ++ N+E   G  G +AR++G+ A +++   +     V+LPSG  + I   CRA IGQV         + KAG      + K    P VRG AMNP +HPHGG
Sbjct:   48 KITVRHRGGGLKRHYRIIDFKRNKDDIPAKVASVEYDPNRTANIALLHYVDG-----EKRYIIAPKGLKVGEMIFSGPESDIKVGNALPLINIPVGTIIHNIEMKPGKGGQIARSAGNSAQLMA--KEGRYALVRLPSGEVRQILIECRATIGQVGNLDHENVTIGKAGR-----KRKMGIRPTVRGSAMNPNDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PANGI (50S ribosomal protein L2, chloroplastic OS=Panax ginseng GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 65/194 (33.51%), Postives = 99/194 (51.03%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGKGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHPHGG 232          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_ANTFO (50S ribosomal protein L2, chloroplastic OS=Anthoceros formosae GN=rpl2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.585e-21
Identity = 67/196 (34.18%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   75 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            + HR G  +  +R +DF      + G +A I +DP R   +    +        +K+  +  +GM  G  V    +A + +GN LP+ ++P G  + NVE   G  G LARA+G  A II+   +     ++LPSG  ++I   C A IGQV       + + KAG+   ++  KR   PKVRGV MNP++HPHGG
Sbjct:   51 SRHRGGGHKRIYRKIDFLRDKKDIFGRIATIEYDPNRNTFICLTYYEDG-----EKKYILYPQGMRIGDSVVSSTEAPISIGNALPLTNMPLGTAIHNVEITPGKGGQLARAAGAVAKIIA--KEGRLATLRLPSGEVRLISQKCLATIGQVGNSDANNRTIGKAGS--KRWLGKR---PKVRGVVMNPIDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SHEB9 (50S ribosomal protein L2 OS=Shewanella baltica (strain OS195) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 62/185 (33.51%), Postives = 94/185 (50.81%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +   +  + +DP R A +A V +        ++   +AA+GM  G  +  G  A +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +++   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   62 YRLIDFKRDKDGIPAKIERLEYDPNRTANIALVLYADG-----ERRYILAAKGMQAGDKIQSGVAAEIKTGNAMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVVAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGIRPTVRGVAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_RALME3.585e-2134.6050S ribosomal protein L2 OS=Ralstonia metalliduran... [more]
RL2_MACCJ3.585e-2134.4350S ribosomal protein L2 OS=Macrococcus caseolytic... [more]
RL2_EHRCJ3.585e-2135.9850S ribosomal protein L2 OS=Ehrlichia canis (strai... [more]
RL2_DESRM3.585e-2134.0550S ribosomal protein L2 OS=Desulfotomaculum reduc... [more]
RL2_BACLD3.585e-2133.4950S ribosomal protein L2 OS=Bacillus licheniformis... [more]
RL2_BACA23.585e-2133.4950S ribosomal protein L2 OS=Bacillus amyloliquefac... [more]
RL2_ALKMQ3.585e-2133.1750S ribosomal protein L2 OS=Alkaliphilus metallire... [more]
RK2_PANGI3.585e-2133.5150S ribosomal protein L2, chloroplastic OS=Panax g... [more]
RK2_ANTFO3.585e-2134.1850S ribosomal protein L2, chloroplastic OS=Anthoce... [more]
RL2_SHEB94.682e-2133.5150S ribosomal protein L2 OS=Shewanella baltica (st... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
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