CF834719

Overview
NameCF834719
Unique NameCF834719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CHLCH (50S ribosomal protein L2 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 66/209 (31.58%), Postives = 102/209 (48.80%), Query Frame = 3
Query:   48 GAGSVFKSHTHHRKG--PAQFRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            G  S  +  + HR G     +R +DF      +   VA I +DP R A +A + +        +K   +A +G+  G  V  G+K  +  GN +P+++IP G  + N+E   G  G + R++G +AV+ +   + D   +KLPSG  + +   CRA IG +         L KAG         R+ W    P+ RG+AMNPV+HP GG
Sbjct:   42 GRNSAGRKTSRHRGGGHKRHYRIIDFKRNKDGIVATVAAIEYDPNRSARIALLHYIDG-----EKRYILAPKGLKVGDKVESGEKVEIKTGNTMPMKNIPLGTDIHNIEMKAGKGGQIVRSAGAFAVLAAR--EGDYVTLKLPSGEIRKVRVECRATIGVIGNADHENIDLGKAG---------RSRWLGIRPQTRGMAMNPVDHPMGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_CHLAA (50S ribosomal protein L2 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=rplB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 74/215 (34.42%), Postives = 108/215 (50.23%), Query Frame = 3
Query:   24 RVIRAQRKGAGSVFKSH--THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            R+I   RK AG   +      HR G  +  +R +DF      +   V  I +DP R A +A + +        +K   IA  G+  G  V  G  A + VGN LP+ +IP G  + N+E  +G  GVL R++G  A +++   + D   V++PSG  ++I   C A IGQV         L KAG +  ++  +R   P+VRG AMNP +HPHGG
Sbjct:   32 RLIEPLRKKAGRNNQGRITVRHRGGGHKRFYRIIDFKRNKFGVPAKVQAIEYDPNRTARIALLAYADG-----EKRYIIAPLGLKVGDTVMSGPDAEIRVGNALPLSAIPLGTQIHNIELEIGRGGVLVRSAGTAAQLMA--KEGDYAIVRMPSGEMRMIHLRCMATIGQVGNVDHQNIRLGKAGRS--RWLGRR---PRVRGAAMNPRDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_PSINU (50S ribosomal protein L2, chloroplastic OS=Psilotum nudum GN=rpl2 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 66/196 (33.67%), Postives = 100/196 (51.02%), Query Frame = 3
Query:   75 THHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            + HR G  +  +R +DF   N    G +A I +DP R + +  V + +       K   +  +G+  G  ++ G +A +  GN +P+  IP G  + N+E   G  G L RA+G  A I++   +     ++LPSG  ++I   C A IGQV      +  L KAG+   ++  KR   P VRGVAMN V+HPHGG
Sbjct:   51 SRHRGGGHKRIYREIDFRRNNNDAPGKIATIEYDPNRNSYICIVNYENG-----DKRYILHPKGLNVGDLIFSGTEAPISNGNTIPLTKIPVGTFIHNIELTPGKGGQLVRAAGTVAKIMA--KEEKWATIRLPSGEFRLISKNCLATIGQVGNIDANKITLGKAGS--KRWLGKR---PIVRGVAMNSVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2_DAUCA (50S ribosomal protein L2, chloroplastic OS=Daucus carota GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 65/194 (33.51%), Postives = 99/194 (51.03%), Query Frame = 3
Query:   81 HRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E   G  G LARA+G  A +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV+HPHGG
Sbjct:   51 HRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITRGRGGQLARAAGAVAKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVDHPHGG 232          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RK2B_ATRBE (50S ribosomal protein L2-B, chloroplastic OS=Atropa belladonna GN=rpl2-B PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.682e-21
Identity = 71/223 (31.84%), Postives = 107/223 (47.98%), Query Frame = 3
Query:    3 VPSKEMGRVIRAQR---KGAGSVFKSHTHHRKGPAQ--FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            V S     +I  QR   KG  +       HR G  +  +R +DF      + G +  I +DP R A +  + +        +K   +   G   G  +  G +  + +GN LP+  +P G  + N+E  +G  G LARA+G    +I+   +  +  +KLPSG  ++I   C A +GQV   G  +K L +AG+   ++  KR   P VRGV MNPV HPHGG
Sbjct:   22 VKSNPRNNLIYGQRRCGKGRNARGIITARHRGGGHKRLYRKIDFRRNEKDIYGRIVTIEYDPNRNAYICLIHYGDG-----EKRYILHPRGAIIGDTIVSGTEVPIKMGNALPLTDMPLGTAIHNIEITLGKGGQLARAAGAVPKLIA--KEGKSATLKLPSGEVRLISKNCSATVGQVGNVGVNQKSLGRAGS--KRWLGKR---PVVRGVVMNPVNHPHGG 232          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_TROWT (50S ribosomal protein L2 OS=Tropheryma whipplei (strain Twist) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   99 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++R +DF   +++G +K  VA I +DP R A +A + F         K   +A  G+  G  V  G  A +  GN L +R IP G ++  VE   G    LAR++G    + +   D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_TROW8 (50S ribosomal protein L2 OS=Tropheryma whipplei (strain TW08/27) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 71/192 (36.98%), Postives = 98/192 (51.04%), Query Frame = 3
Query:   99 QFRSLDF--GERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            ++R +DF   +++G +K  VA I +DP R A +A + F         K   +A  G+  G  V  G  A +  GN L +R IP G ++  VE   G    LAR++G    + +   D D   +KLPSG  +++   CRA IG+V  G R    L KAG         R+ W    P VRGVAMNPV+HPHGG
Sbjct:   61 RYRLVDFRRSDKDG-VKAKVAHIEYDPNRTARIALLHFLDG-----AKRYILAPSGLKQGDVVESGSSADIRPGNSLCIRDIPVGTILHAVELRPGQGAKLARSAGSSVRLSAK--DGDFAILKLPSGEIRMVSLSCRATIGEVGNGQRLNVSLGKAG---------RSRWCGVRPSVRGVAMNPVDHPHGG 235          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_SHEDO (50S ribosomal protein L2 OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 64/185 (34.59%), Postives = 95/185 (51.35%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGG 656
            +R +DF      +   V  I +DP R A +A V +        ++   +AA+GM +G  +  G  + +  GN +P+R+IP G+VV  VE   G    +AR++G Y  +I+   D     ++L SG  + +P  CRA  G+V       + L KAG      +  R   P VRGVAMNPV+HPHGG
Sbjct:   62 YRLIDFKRNKDGIPAKVERIEYDPNRTAHIALVLYADG-----ERRYILAAKGMKSGDPIQSGVGSEIKTGNSMPLRNIPVGSVVHAVEMKPGKGAQIARSAGAYVQVIAR--DGAYATLRLRSGEMRKVPVDCRATFGEVGNAEHMLRQLGKAG-----AKRWRGVRPTVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RICBR (50S ribosomal protein L2 OS=Rickettsia bellii (strain RML369-C) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 64/189 (33.86%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HPHGG
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGG 234          
BLAST of CF834719 vs. ExPASy Swiss-Prot
Match: RL2_RICB8 (50S ribosomal protein L2 OS=Rickettsia bellii (strain OSU 85-389) GN=rplB PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 6.115e-21
Identity = 64/189 (33.86%), Postives = 95/189 (50.26%), Query Frame = 3
Query:  102 FRSLDFGERNGYLKGVVAEIIHDPGRGAPLARVTFRHPFRYMKQKELFIAAEGMYTGQFVYCGKKATLMVGNVLPVRSIPEGAVVCNVEHHVGDRGVLARASGDYAVIISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCW----PKVRGVAMNPVEHPHGG 656
            +R +DF      +  +V  I +DP R A +A + +        +    +A + +  G  +   K A + +GN LP+R IP G  + NVE  VG  G +AR++G    ++    D+   ++KL SG  +++P  C A IG V+   +    L KAG         RN W    P VRGVAMNPV+HPHGG
Sbjct:   62 YRVIDFKRNKLDISAIVERIEYDPNRTAFIALIKYEDG-----EHAYILAPQKLVVGDKIISSKDADIKIGNCLPLRYIPIGTTLHNVEMKVGKGGQIARSAGTSVDLV--GKDSGYAQIKLKSGEFRLVPLDCMATIGTVSNPDQKNINLGKAG---------RNRWLGWRPHVRGVAMNPVDHPHGG 234          
The following BLAST results are available for this feature:
BLAST of CF834719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL2_CHLCH4.682e-2131.5850S ribosomal protein L2 OS=Chlorobium chlorochrom... [more]
RL2_CHLAA4.682e-2134.4250S ribosomal protein L2 OS=Chloroflexus aurantiac... [more]
RK2_PSINU4.682e-2133.6750S ribosomal protein L2, chloroplastic OS=Psilotu... [more]
RK2_DAUCA4.682e-2133.5150S ribosomal protein L2, chloroplastic OS=Daucus ... [more]
RK2B_ATRBE4.682e-2131.8450S ribosomal protein L2-B, chloroplastic OS=Atrop... [more]
RL2_TROWT6.115e-2136.9850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_TROW86.115e-2136.9850S ribosomal protein L2 OS=Tropheryma whipplei (s... [more]
RL2_SHEDO6.115e-2134.5950S ribosomal protein L2 OS=Shewanella denitrifica... [more]
RL2_RICBR6.115e-2133.8650S ribosomal protein L2 OS=Rickettsia bellii (str... [more]
RL2_RICB86.115e-2133.8650S ribosomal protein L2 OS=Rickettsia bellii (str... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_06A05_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa06A05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF834719 ID=CF834719; Name=CF834719; organism=Citrus sinensis; type=EST; length=656bp
CGGTGCCCTCTAAAGAAATGGGTCGTGTGATTCGCGCACAGCGTAAGGGT
GCAGGTTCGGTCTTCAAGTCCCACACCCACCACCGTAAGGGTCCGGCCCA
GTTCCGCAGCCTCGACTTCGGTGAGCGTAATGGTTACCTCAAGGGTGTCG
TCGCAGAGATTATTCACGATCCGGGTCGTGGTGCCCCGCTGGCCCGAGTC
ACCTTTCGTCACCCTTTTCGCTACATGAAACAAAAGGAGCTTTTCATTGC
CGCTGAGGGTATGTACACGGGTCAGTTCGTGTACTGCGGCAAGAAAGCCA
CTCTGATGGTTGGTAATGTGCTGCCCGTTAGATCTATCCCTGAAGGAGCT
GTTGTTTGCAACGTTGAGCATCATGTTGGTGATCGCGGTGTTTTGGCTAG
AGCTTCTGGTGATTATGCCGTTATCATCAGTCATAACCCCGATAATGACA
CCACCAGGGTCAAGCTTCCATCTGGTGCCAAAAAGATTATTCCAAGTGGC
TGCAGAGCGATGATTGGGCAGGTTGCCGGCGGAGGGAGGACTGAGAAGCC
CCTTCTCAAAGCTGGTAATGCATACCACAAATTCAGAGTGAAGCGAAACT
GCTGGCCTAAGGTGCGTGGTGTGGCCATGAACCCAGTGGAGCATCCTCAT
GGAGGA
back to top